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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ypuBC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ypuB | - | 2434143..2434346 | ||||
| ypuC | - | 2432969..2433358 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Petersohn A, et al. (1999), Azevedo V, et al. (1993) |
| Comments: | In a Northern blotting experiment, Azevedo found a 1.2 kb transcript covering ypuB and ypuC, but starting far upstream of ypuB. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | ND | 2434368..2434409 | TGCTGATTATACAAAAAGTGGATTGGGAATGATAAAAGAACA |
Petersohn A, et al. (1999): HB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CGAGTGATGTTGCTGCGGGTTACGCCTTCGGCGGTGTTTGGCTGAGTTTGAATGTTTTGGT >>>>>>>>>>>>>>>>>> <<<<<<<<<<<<<<<<<<<< |
ypuB |
|