Regulated Operon: yrkO

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yrkO
+ 2705398..2706615
COG2311S  

Operon evidence: Genome analysis
Reference: Ogura M, et al. (2008)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YrkP Positive -114:-86 2705219..2705246 CGTAAATCTTAACAATTTATGAAAGCTG Ogura M, et al. (2008): GS FT RG
YrkP Positive -82:-45 2705251..2705288 TCGCCACAAATTTGTCACATTTTCTAAAAAAAATGATG Ogura M, et al. (2008): GS FT RG
YrkP Positive -41:-18 2705292..2705315 CTTCATAAATTGTTAAGATTCGGT Ogura M, et al. (2008): GS FT RG
SigA Promoter -50:+10 2705283..2705342 ATGATGACTCTTCATAAATTGTTAAGATTCGGTCTTTATATTTATCCATTGTAAGGCTCA Ogura M, et al. (2008): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GATTGCATGACTTCAAATTAGTGTTGTTGAATGAAGCGGGCATTAAACGGACAGATTTGATATATGGACTAGTTATTTTTATATCATTTA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>       <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
2706628..2706701
13..86
-19.0
 yrkO

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai