Regulated Operon: acoABCL

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
acoA yfjK + 879002..880003
COG1071C acoA-BAC acoA-STR  
acoB yfjJ + 880007..881035
COG0022C acoB-BAC  
acoC yfjI + 881049..882245
COG0508C acoC-BAC acoC-STR  
acoL yfjH + 882266..883642
COG1249C acoL-BAC  

Operon evidence: Northern blotting (4637 bp transcript); transcriptional fusions
Reference: Ali NO, et al. (2001), Reents H, et al. (2006), BSORF
Comments: Northern blotting results in BSORF show an acoABCLR-sspH transcript, an acoR-sspH transcript, and a monocistronic sspH transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AcoR Positive -123:-60 878851..878914 CGAGACAAATGAATCAGTTTGAGACAAAACGAGACACACGTCTCAAACTGTCTCCAAAGTGAAG Ali NO, et al. (2001): RG
CcpA Negative +459:+481 879432..879454 AAAATGTAAGCGTTTGCTTTTTC Miwa Y, et al. (2000): RG
SigL Promoter -34:+6 878940..878979 AAAAGACTGGCACACTTCTTGCATTTATAATGGTGAACCC Ali NO, et al. (2001): PE HM

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCAGGCGCATGGATATAAGGCGCCTGCTTTTTTATTGTTGAA
     >>>>>>>>           <<<<<<<<
883654..883680
12..38
-18.5
acoL

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai