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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | alsSD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| alsS | - | 3709628..3711340 | COG0028EH | ilvB-BAC | ||
| alsD | - | 3708799..3709566 | COG3527Q | alsD-BAC |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Renna MC, et al. (1993) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AlsR | Positive | ND | ND | ND |
Renna MC, et al. (1993): DP DB |
| CcpA | Positive | ND | ND | ND |
Renna MC, et al. (1993): DB |
| SigA | Promoter | -46:+17 | 3711378..3711440 | GAATCGATATTGGAGGTCAATTTCCAAAGAGTGTATAGTGAAACTTATCACAAGATATTTAAA |
Renna MC, et al. (1993): PE |
| YdiH | Negative | -59:-24 | 3711380..3711415 | AAAGAGTGTATAGTGAAACTTATCACAAGATATTTA |
Reents H, et al. (2006): RG |
| ArfM | Positive | ND | ND | ND |
Cruz Ramos H, et al. (2000): NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGAAAGCCCCTTTTAGCAGGGCTTTCTTTTTATTTGG >>>> <<<< |
alsD |
|