Regulated Operon: | araABDLMNPQ-abfA |
Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
---|---|---|---|---|---|---|
araA | - | 2947385..2948875 | COG2160G | |||
araB | - | 2945689..2947371 | COG1069C | |||
araD | - | 2944983..2945672 | COG0235G | araD-BAC | ||
araL | yseA | - | 2944187..2945005 | COG0647G | ||
araM | yseB | - | 2943006..2944190 | COG0371C | ||
araN | yseC | - | 2941674..2942975 | COG1653G | ||
araP | yseD | - | 2940697..2941638 | COG1175G | ||
araQ | yseE | - | 2939851..2940696 | COG0395G | ||
abfA | - | 2938330..2939832 | COG3534G |
Operon evidence: | Northern blotting (11.0 kb transcript) |
---|---|
Reference: | Sa Nogueira I & Ramos SS (1997), Genbank X89810 |
Comments: | premature transcription termination or internal promoters may have lead to other detected mRNA lengths. One more putative terminator is listed in the Genbank record. |
Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
---|---|---|---|---|---|
AraR | Negative | -8:+17 | 2948956..2948980 | ATAAAATTGTTCGTACAAATATTTA |
Sa Nogueira & Mota LJ (1997): DB HM Mota LJ, et al. (1999): FT |
AraR | Negative | +38:+58 | 2948915..2948935 | CATTAGTACGTATCTTTTGTA |
Sa Nogueira I & Mota LJ (1997): DB HM Mota LJ, et al. (1999): FT |
CcpA | Negative | +50:+83 | 2948889..2948922 | CTTTTGTATTTGAAAGCGTTTTATTTTATGAGAA |
Inacio JM, et al. (2003): RG NB |
SigA | Promoter | -50:+10 | 2948963..2949012 | AAAGATTGACAGTATAATAGTCAATTACTATAATAAAATTGTTCGTACAA |
Sa Nogueira I & Ramos SS (1997): PE HM |
CcpA | Negative | ND | 2946674..2946696 | TCAATGAAAACGATTACAAAGGA |
Miwa Y, et al. (2000): RG |
Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
---|---|---|---|---|
GCAAAGCCGGAGATTTCTCTCCGGCTTGTCTTTCAACTGC >>>>>>>> <<<<<<<< |
abfA |
|