Transcription factor: AraR

Factor type	LacI family
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	ATTTGTACGTACAAAT
Comment	transcriptional regulator (LacI family); negative regulation of the L-arabinose metabolic operon (araABDLMNPQ); alternate gene name: araC, yvbS
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
abnA	abnA	SigA	Negative	`2950159..2950187`	`-48:-20`	CTATTTTTTTGTCTGTACAAATTACAGCA	Raposo MP, et al. (2004): RG PE SDM
araABDLMNPQ-abfA	araA	SigA	Negative	`2948956..2948980`	`-8:+17`	ATAAAATTGTTCGTACAAATATTTA	Sa Nogueira & Mota LJ (1997): DB HM Mota LJ, et al. (1999): FT
araABDLMNPQ-abfA	araA	SigA	Negative	`2948915..2948935`	`+38:+58`	CATTAGTACGTATCTTTTGTA	Sa Nogueira I & Mota LJ (1997): DB HM Mota LJ, et al. (1999): FT
araE	araE	SigA	Negative	`3485556..3485575`	`-6:+14`	ATATTTGTACGTACTAATTA	Sa Nogueira I & Ramos SS (1997): DB HM Mota LJ, et al. (1999): FT
araE	araE	SigA	Negative	`3485510..3485534`	`+36:+60`	TAATATAAGTACGTACAATTGAAGG	Sa Nogueira I & Ramos SS (1997): DB HM Mota LJ, et al. (1999): FT
araR	araR	SigA	Negative	`3485637..3485656`	`-6:+14`	AAATTTGTCCGTATACATTT	Sa Nogueira I & Mota LJ (1997): DB HM Mota LJ, et al. (1999): FT
xsa	xsa	SigA	Negative	`2915293..2915324`	`-77:-46`	TATAAATACATACGTACAAATATAAAAACAAT	Raposo MP, et al. (2004): RG PE FT
xsa	xsa	SigA	Negative	`2915254..2915285`	`-38:-7`	GTCGTTGACATGTACGAACATATATAATATGG	Raposo MP, et al. (2004): RG PE FT