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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | araE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| araE | yvbR | - | 3484072..3485466 | COG2814G |
| Operon evidence: | Northern blotting (1.7 kb transcript) |
|---|---|
| Reference: | Sa Nogueira I & Ramos SS (1997), Genbank Y12105 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AraR | Negative | -6:+14 | 3485556..3485575 | ATATTTGTACGTACTAATTA |
Sa Nogueira I & Ramos SS (1997): DB HM Mota LJ, et al. (1999): FT |
| AraR | Negative | +36:+60 | 3485510..3485534 | TAATATAAGTACGTACAATTGAAGG |
Sa Nogueira I & Ramos SS (1997): DB HM Mota LJ, et al. (1999): FT |
| CcpA | Negative | +67:+80 | 3485490..3485503 | TGAAAACGCTTTAC |
Inacio JM, et al. (2003): RG NB |
| SigA | Promoter | -39:+5 | 3485565..3485608 | AACATTGACAGAAAATGCAAACAAGATTATTCTATATTTGTACG |
Sa Nogueira I & Ramos SS (1997): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TGAAACAGCCCTTTCTACGGGAAGGGCTGTTTATATTGGGATGC >>>>>>>>>> <<<<<<<<<< |
araE |
|