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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | argCJBD-carAB-argF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| argC | + | 1195034..1196071 | COG0002E | |||
| argJ | argE | + | 1196091..1197311 | COG1364E | argJ-BAC argE-BAC | |
| argB | + | 1197326..1198102 | COG0548E | |||
| argD | + | 1198099..1199256 | COG4992E | argD-STA x1585-BAC | ||
| carA | cpa | + | 1199327..1200388 | COG0505EF | ||
| carB | cpa | + | 1200381..1203473 | COG0458EF | carB-STR | |
| argF | + | 1203461..1204420 | COG0078E |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | O'Reilly M & Devine KM (1994), O'Reilly M, et al. (1994), Ogura M, et al. (1997) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Positive | ND | ND | ND |
O'Reilly M, et al. (1994): RG |
| AhrC | Negative | -61:-44 | 1194941..1194958 | AATGAATAAAAATATTAA |
Czaplewski LG, et al. (1992): GS FT Smith MC, et al. (1986): Mung-bean nuclease mapping |
| AhrC | Negative | -31:-14 | 1194970..1194986 | AATTAATTTTTATTCAT |
Czaplewski LG, et al. (1992): GS FT Smith MC, et al. (1986): Mung-bean nuclease mapping |
| AhrC | Negative | +116:+133 | 1195117..1195134 | ATGCATACTTTATTCATC |
Czaplewski LG, et al. (1992): GS FT Smith MC, et al. (1986): Mung-bean nuclease mapping |
| SigA | Promoter | -44:+17 | 1194958..1195018 | AATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAA |
O'Reilly M, et al. (1994): PE Smith MC, et al. (1986): S1, mung-bean nuclease mapping |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACTGCTGAGCCAAACTCAGCAGTTTTTTTGATGGCAA >>>>>>>> <<<<<<<< |
argF |
|