 |
Copyright: Human Genome Center, Inst. Med.
Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Factor type | ArgR (Unique) |
|---|---|
| SWISS-PROT | ND |
| SubtiList | ND |
| Consensus seq. | CATGAATAAAAATg/tCAAg/t (compiled consensus) |
| Comment | novel mode of DNA recognition; represses the arginine biosynthesis genes and activates the arginine catabolism genes; positive role of AhrC may involve protein-protein interaction with RocR. |
| Link to | Phylogenetic profile, Weight matrix & Motif alignment |
| Operon | Regulated Gene | Sigma | Regulation | Absolute position | Location | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|---|---|
| argCJBD-carAB-argF | argC | SigA | Negative | 1194941..1194958 | -61:-44 | AATGAATAAAAATATTAA |
Czaplewski LG, et al. (1992): GS FT Smith MC, et al. (1986): Mung-bean nuclease mapping |
| argCJBD-carAB-argF | argC | SigA | Negative | 1194970..1194986 | -31:-14 | AATTAATTTTTATTCAT |
Czaplewski LG, et al. (1992): GS FT Smith MC, et al. (1986): Mung-bean nuclease mapping |
| argCJBD-carAB-argF | argC | SigA | Negative | 1195117..1195134 | +116:+133 | ATGCATACTTTATTCATC |
Czaplewski LG, et al. (1992): GS FT Smith MC, et al. (1986): Mung-bean nuclease mapping |
| rocABC | rocA | SigL | Positive | 3880550..3880568 | -18:+1 | CTTGCATTTTTATTCATAT |
Klingel U, et al. (1995): GS FT |
| rocDEF | rocD | SigL | Positive | 4145553..4145571 | -18:+1 | CTTGCATTTATATAAAGGG |
Miller CM, et al. (1997): GS FT |
|