Regulated Operon: bpr

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
bpr bpf + 1599283..1603584
COG4412S  

Operon evidence: Terminator prediction
Reference: Tsukahara K, et al (2008)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
DegU Positive -155:-60 1599043..1599138 TTATAAAGTCTTTTTCCCTATTGCTTCCTTCGCTTAGTAACAAAACAGATAATTAGACCCATTTATTTTTGTGACATTTTTATCATTTTCATATAT Tsukahara K, et al (2008): FT RG SDM
SigA Promoter -50:+10 1599148..1599207 GAATGACATGAAACGACAATATCTGTAATTCAGATTGTCTACAGTTAATATACAGCGATG Tsukahara K, et al (2008): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TAAGTGGAAAAAAAGCTGCCGTCATTGGCAGCTTTTTTTATATCCTC
              >>>>>>      <<<<<<
1603596..1603613
12..29
-12.9
bpr

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai