Regulated Operon: clpE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
clpE ykvH - 1435628..1437727
COG0542O clpE-STR  

Operon evidence: Northern blotting (2.3 kb transcript)
Reference: Derre I, et al. (1999), Nguyen TT, et al. (2009)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CtsR Negative -33:-9 1437936..1437959 AAAGTCAAAGATAGTCAGAGTATA Derre I, et al. (1999): GS FT
CtsR Negative -5:+20 1437908..1437932 TTAATCAAAGTTGGTCAAACAAACC Derre I, et al. (1999): GS FT
CtsR Negative +40:+63 1437865..1437888 TTGGTCAAAGATAGTCAAATATTC Derre I, et al. (1999): GS FT
CtsR Negative -5:+19 1437790..1437813 ATAGTCAAAGAAGGTCAAACCCAA Derre I, et al. (1999): GS FT
CtsR Negative +42:+66 1437743..1437767 TTGGTCAAAGATGATCAAATTATTA Derre I, et al. (1999): GS FT
SigA Promoter -39:+5 1437923..1437966 AGACTTGAAAGTCAAAGATAGTCAGAGTATACTATTAATCAAAG Derre I, et al. (1999): PE
SigA Promoter -38:+5 1437804..1437846 TGGTTTGAATGCCGTTAAGTTTGCCGTATACTAATAGTCAAAG Derre I, et al. (1999): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AATCAGCGGTTTCCTTTTAGGAAGCCGCTTTTTTTTATACTTT
     >>>>>>>>>>   <<<<<<<<<<
1435599..1435621
7..29
-17.7
 clpE

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai