Regulated Operon: csgA-ybxH

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
csgA
+ 228066..228314

 
ybxH
+ 228331..228522

 

Operon evidence: Northern blotting (0.6 kb transcript)
Reference: Shcheptov M, et al. (1997)
Comments: terminator is inside the coding region of the downstream gene ybxI, which is transcribed in the opposite direction. The indicated stem-loop agrees better with the measured mRNA length than the terminator proposed in SubtiList.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigG Promoter ND 227992..228045 ATTTTTCGCGTATGGATTTTCCCTATTTTAGCAAGCTATAGGGTAAAGATAGCA Shchepetov M, et al. (1997): DB RG
SpoVT Negative ND ND ND Shchepetov M, et al. (1997): DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ATTTAGAGCCCTGCCGTGCAGGGCTCTTTTATTTAGGATGT
     >>>>>>>>>   <<<<<<<<<
228522..228542
0..20
-19.2
ybxH

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai