Regulated Operon: | csgA-ybxH |
Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
---|---|---|---|---|---|---|
csgA | + | 228066..228314 | ||||
ybxH | + | 228331..228522 |
Operon evidence: | Northern blotting (0.6 kb transcript) |
---|---|
Reference: | Shcheptov M, et al. (1997) |
Comments: | terminator is inside the coding region of the downstream gene ybxI, which is transcribed in the opposite direction. The indicated stem-loop agrees better with the measured mRNA length than the terminator proposed in SubtiList. |
Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
---|---|---|---|---|---|
SigG | Promoter | ND | 227992..228045 | ATTTTTCGCGTATGGATTTTCCCTATTTTAGCAAGCTATAGGGTAAAGATAGCA |
Shchepetov M, et al. (1997): DB RG |
SpoVT | Negative | ND | ND | ND |
Shchepetov M, et al. (1997): DB |
Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
---|---|---|---|---|
ATTTAGAGCCCTGCCGTGCAGGGCTCTTTTATTTAGGATGT >>>>>>>>> <<<<<<<<< |
ybxH |
|