Regulated Operon: cydABCD

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
cydA yxkK - 3977791..3979197
COG1271C cbdA-STA cydA-BAC  
cydB yxkL - 3976791..3977807
COG1294C  
cydC yxkM - 3975088..3976791
COG4988CO  
cydD yxkN - 3973364..3975091
COG4987CO  

Operon evidence: Northern blotting (6.0 kb transcript)
Reference: Winstedt L, et al. (1998), Yoshida K, et al. (2000)
Comments: Various shorter transcripts were found by Yoshida, which may be a result of the mRNA molecule being highly unstable (see Winstedt).

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CcpA Negative -8:-37 3979398..3979427 CTTTATTTTTGAAATGAATCGTTGTAAAGT Puri-Taneja A, et al. (2007): RG FT
ResD Positive -107:-58 3979448..3979497 GCCGACATAAATAAGCAACAAAATAGACAAAAATCCGTCACATAGTGCGG Puri-Taneja A, et al. (2007): RG FT
SigA Promoter -39:+9 3979382..3979429 GGCTTTATTTTTGAAATGAATCGTTGTAAAGTACTTAATATGAACCAG Winstedt L, et al. (1998): PE RG NB
YdiH Negative +64:+105 3979286..3979327 TTTTGACACATTTGTGAAATATTGAGCAATATTTTTTTCGTC Schau M, et al. (2004): RG FT
Larsson JT, et al. (2005): RG DB
Reents H, et al. (2006): RG
YdiH Negative +99:+140 3979251..3979292 TTTCGTCTATTTTGTGAATTACTGATCAAAGTCTCGGTTCTA Schau M, et al. (2004): RG FT
Larsson JT, et al. (2005): RG DB
Reents H, et al. (2006): RG
YdiH Negative +131:+172 3979219..3979260 CTCGGTTCTATTTGTGAAGTAGTGAGCAAATTAACAGTTTTA Schau M, et al. (2004): RG FT
Larsson JT, et al. (2005): RG DB
Reents H, et al. (2006): RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TAAAAGACAGCCCTAAAAGGCTGTCTTTTTTGTTTGAAAA
     >>>>>>>      <<<<<<<
3973342..3973361
3..22
-13.2
 cydD

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai