Regulated Operon: degR

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
degR prtR - 2308157..2308339

 

Operon evidence: upstream and downstream genes are in the opposite direction
Reference: Nagami Y & Tanaka T (1986)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComK Negative ND ND ND Ogura M & Tanaka T (1996): DB RG
Ogura M, et al. (1997): DB DP
SigD Promoter -41:+8 2308396..2308444 CAAAATAGAAAAGAAAATAAAAATAAGCCGATATAACTATTGAACCAGA Helmann JD, et al. (1988): Genetics and Biotechnology of Bacilli, Vol. 2, pp. 189-193: in-vitro transcription
Ogura M, et al. (1996): RG DB PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CAAATAGGAGAGGCGAATGCCTCTCCTCTATTTGTCATCTCATCA
     >>>>>>>>>    <<<<<<<<<
2308137..2308158
-1..20
-19.3
degR

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai