Transcription factor: SigD

Factor type	ND
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	TAAA(-35)-N15-GCCGATAT(-10)
Comment	RNA polymerase Sigma-28 factor (Sigma D). Autolytic enzymes; defect in flagellar synthesis.
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
cheV	cheV	`1473532..1473580`	`-41:+8`	GCTGCCATTCACTTTTTACAAATTACGCCGATATATACAGTACAATACT	Fredrick KL & Helmann JD (1994): PE DB RG, in-vitro transcription
degR	degR	`2308396..2308444`	`-41:+8`	CAAAATAGAAAAGAAAATAAAAATAAGCCGATATAACTATTGAACCAGA	Helmann JD, et al. (1988): Genetics and Biotechnology of Bacilli, Vol. 2, pp. 189-193: in-vitro transcription Ogura M, et al. (1996): RG DB PE
dltABCDE	dltA	`3951975..3952022`	None	ATAAAGATTCATTTTCAAAAACATACGCCGATATATTAATTTGAGGGA	Perego M, et al. (1995): DB RG
epr	epr	`3939798..3939848`	`-43:+8`	CCTTCTTACTATTAATCTCTCTTTTTTTCTCCGATATATATATCAAACATC	Dixit M, et al. (2002): PE
fla-che	flgB	`1691011..1691062`	`-41:+11`	CATTTTTCTTCAAAAAGTTTCAAAAATGCCGAAAAGAAAGGAGAAAAAACAG	Gilman MZ, et al. (1984): RNA probes Estacio W, et al. (1998): PE
hag	hag	`3635988..3636033`	`-40:+6`	TTTTGTATTAACAAAATCAGAGACAATCCGATATTAATGATGTAGC	Mirel DB & Chamberlin MJ (1989): PE DB NB
lytABC	lytA	`3663103..3663151`	`-42:+7`	TTTTTCTTTAAAATATAAAATAGGTTGACGATAAAATATAATGAGGTGA	Lazarevic V, et al. (1992): PE DB Kuroda A & Sekiguchi J (1993): PE RG
lytD	lytD	`3687498..3687547`	`-41:+9`	TTCACCTATAAATGAAGCATGCGCGTGCCGATAAATAAACTAGTTTTATA	Rashid MH, et al. (1995): DB, SDS-PAGE Margot P, et al. (1994): PE DB
lytF	lytF	`1013291..1013344`	`-42:+12`	TAAAAAGGCAAAACGATGAGACAAATGTGCCGATATAAAAAAGAAACAGCAAAT	Margot P, et al. (1999): DB SDS-PAGE Ohnishi R, et al. (1999): PE DB NB
tlpA-mcpA	mcpA	`3208170..3208221`	None	TTTTGCTGTATATATTTACCCATTTCCAGCCGATATGAAGGGTAGCATAAAA	Hanlon DW & Ordal GW (1994): HM
mcpB	mcpB	`3212454..3212497`	None	TTTTATTTTAAAACTTTTTTAAGCAGCCGATATATACTGTATCA	Hanlon DW & Ordal GW (1994): HM
mcpC	mcpC	`1463571..1463622`	`-43:+9`	TTTGATTATTCATTTTTCAAACGAAAGGGCCGATATAGAAATTAGGAGGGGA	Muller J, et al. (1997): PE DB RG
motAB	motA	`1435275..1435321`	`-42:+5`	AATGTCCCTAAAGTTCCGGGCACCAAAACCGATATTAACCATAGACA	Gilman MZ, et al. (1981): S1 RO, in-vitro transcription Gilman MZ & Chamberlin ML (1982): S1
nfrA-ywcH	nfrA	`3912241..3912286`	`-41:+5`	TTTCACTTTTGAGATCACTTTTTTTCGGATATGATAAAAAGTGATA	Moch C, et al. (1998): PE SDM HM
yqxD-dnaG-sigA	sigA	`2601522..2601574`	None	CTTCTTTGGCTCAAGAAATCGTTACATTGAACCGATCTTTAAAATAACTGGAG	Wang LF, et al. (1985): HM Briat JF, et al. (1985): S1
tlpA-mcpA	tlpA	`3210289..3210337`	None	TTTCAATGTAATTTAAAGGAAGATCCGCCGATATAATTTGTAAATTATT	Hanlon DW & Ordal GW (1994): HM
tlpB	tlpB	`3206076..3206122`	None	TTTTTTATTAAACCTTTTATCCTAGTTTGACGATATTAGATTTATCT	Hanlon DW & Ordal GW (1994): HM
tlpC	tlpC	`374513..374560`	None	CTAAAATAAAACTTTAAACCCAAAAACCCGATAAGTAATATGACCTGC	Hanlon DW, et al. (1994): HM SDS-PAGE
ybdO	ybdO	`224994..225048`	None	TTTGAGGTTAATATATACATTATATTCGCCGATAAAAAAGAATAAGAGAGAATAC	Serizawa M, et al. (2004): AR NB
yfmTS	yfmT	`807027..807081`	None	TGAACCGATAGAAAAAATAGATTCGCCCATATTTTGATTTGCGGTTATAAAGGAG	Serizawa M, et al. (2004): AR NB
hemAT	hemAT	`1113969..1114017`	None	TCTGCAGCTTCATTCATGTTTCCCTTGGCCGATAAAAAAGAAAAAGGCT	Serizawa M, et al. (2004): AR NB
yjbJ	yjbJ	`1235751..1235803`	None	GCCCGCTTTCAAGTTTCAGTTCTTTGCTCAGCCAATATACAAACGGTCTGACA	Serizawa M, et al. (2004): Master's thesis, Rho Ohnishi, Shinshu University
yjcPQ	yjcP	`1266556..1266603`	None	CAAATTGTTAATCGATAACTTTTCATTCCCGATATTAAAAATGGGAGT	Serizawa M, et al. (2004): AR NB
yjfB	yjfB	`1283342..1283391`	None	TTTCACTGTAAAATCATACAAACCCGCCGATAGGTAAGGCATAGGAGGTG	Serizawa M, et al. (2004): AR NB
ylqB	ylqB	`1671669..1671718`	None	AAATACGCTAAATATCATCCAATTTATTCCGATATTGTATATGAACCCTA	Serizawa M, et al. (2004): AR NB
yoaH	yoaH	`2031192..2031238`	None	TATCACTATAAAACTTGATAACACGTGTCGATATTATGGACATGAGC	Serizawa M, et al. (2004): AR NB
yscB	yscB	`2953735..2953791`	None	AAGAAATGTAAAACAAAGTTAATCTCTGACCGATATAAGGAGCAGAAGGGAGCCTGA	Serizawa M, et al. (2004): AR NB
yvyC-fliDST	yvyC	`3634775..3634819`	`-41:+4`	ATATGTGTAATCTTATCTCGACTTAGTCGATATAAACGATAGATT	Chen L & Helmann JD (1994): RG DB Singer V (1987): Ph.D. thesis. University of California, Berkeley: PE?
comFABC-yvyF-flgM-yvyG-flgKL	yvyF	`3641089..3641133`	`-40:+5`	AGAAGCTAAATGATTCTGTTTTTATGCCGATATAATCACTAGAAA	Gilman MZ, et al. (1981): S1 RO, in-vitro transcription Gilman MZ & Chamberlin ML (1982): S1 Mirel DB, et al. (1994): RO
yxkC	yxkC	`3989157..3989206`	None	ATATTGACTAAGAGAAATAATATAGGCATTATAGTACATATGTTTCGTAC	Serizawa M, et al. (2004): AR NB