Regulated Operon: feuABC-ybbA

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
feuA
- 182370..183323
COG0614P  
feuB
- 181347..182351
COG0609P  
feuC
- 180344..181354
COG0609P  
ybbA
- 179595..180347
COG2819R  

Operon evidence: Genome analysis; downstream genes are on the opposite strand
Reference: Baichoo N, et al. (2002)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
Fur Negative -11:+39 183323..183372 CTATAATTCCAATTGATAATAGTTATCAATTGAACAGGAGGCTCTATAGA Baichoo N, et al. (2002): FT
Ollinger J, et al. (2006): DB SDS-PAGE
SigA Promoter -45:+8 183354..183406 GGAATTTGTCCATGGTGTTATATCTGTTCATTCTCTATAATTCCAATTGATAA Fuangthong M & Helmann JD (2003): PE
SigA Promoter -50:+10 183349..183408 CAGGAATTTGTCCATGGTGTTATATCTGTTCATTCTCTATAATTCCAATTGATAATAGTT Gaballa A, et al. (2007): PE
YbbB Positive -70:-30 183388..183428 GGAGATTGTCCATGATAAATCAGGAATTTGTCCATGGTGTT Gaballa A, et al. (2007): GS FT DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAACCGCTCAACCCTATGAGCGGTTTTTTTATGCCTTC
     >>>>>>>      <<<<<<<
179591..179610
-15..4
-13.1
 ybbA

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai