Regulated Operon: glcU-gdh

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
glcU ycxE + 444461..445324
COG4975G x0378-BAC  
gdh
+ 445344..446129
COG1028IQR gdH-BAC gdH-BAC  

Operon evidence: 5' primer extension analysis of gdh; genes downstream of gdh are on the opposite strand; Northern blotting (1.6 kb transcript)
Reference: Rather PN & Moran CP Jr (1988), Lampel KA, et al. (1986), Nakatani Y, et al. (1989), BSORF, Uratani B, Lampel KA, Lipsky RH, Freese E: Molecular Biology of Microbial Differentiation, edited by J.A. Hoch & P. Setlow, American Society for Microbiology, pp. 71-76 (1985)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigG Promoter -40:+7 444390..444436 TTCCGGCGAATAATCACAACAATTCCAGCCAAAATAACAGCAAATAC Rather PN & Moran CP Jr (1988): PE, promoter mutation
SpoVT Negative ND ND ND Bagyan I, et al. (1996): DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCGACCCAGACATGACATCTGGATCGCTTTCTTTATTAGGCA
     >>>>>>>>>>       <<<<<<<<<<
446139..446165
10..36
-14.3
gdh

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai