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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | hag |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| hag | - | 3634987..3635901 | COG1344N |
| Operon evidence: | Northern blotting (1.0 kb transcript) |
|---|---|
| Reference: | Mirel DB & Chamberlin MJ (1989), Horsburgh MJ, et al. (2001) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CodY | Negative | +70:+129 | 3635865..3635924 | CATATTCAGGGAGGAACAAAACAATGAGAATTAACCACAATATTGCAGCGCTTAACACAC |
Bergara F, et al. (2003): DB RG GS FT |
| SigD | Promoter | -40:+6 | 3635988..3636033 | TTTTGTATTAACAAAATCAGAGACAATCCGATATTAATGATGTAGC |
Mirel DB & Chamberlin MJ (1989): PE DB NB |
| ScoC | Negative | -17:+1 | 3635992..3636009 | AATCCGATATTAATGATG |
Kodgire P, et al. (2008): GS SDM |
| ScoC | Negative | +10:+24 | 3635878..3635892 | AACCACAATATTGCA |
Kodgire P, et al. (2008): GS SDM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGACCTTGGCGTTGCCAGGGTCTTTTAATTTAAATTT >>>>>>>>> <<<<<<<<< |
hag |
|