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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | katX |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| katX | yxlI | + | 3964997..3966640 | COG0753P | katX-BAC x1042-BAC |
| Operon evidence: | Northern blotting (1.8 kb transcript) |
|---|---|
| Reference: | Petersohn A, et al. (1999), Yoshida K, et al. (2000) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| RsfA | Positive | ND | ND | ND |
Juan Wu L, et al. (2000): RG DB |
| SigB | Promoter | -47:+7 | 3964926..3964979 | AAAAAAACGGCTGTTTTAAAATCTTTCCATTCAGGGAATATTGTTACCGTTCAA |
Petersohn A, et al. (1999): NB PE DB 2D-PAGE |
| SigF | Promoter | -39:+3 | 3964935..3964976 | GCTGTTTTAAAATCTTTCCATTCAGGGAATATTGTTACCGTT |
Bagyan I, et al. (1998): PE RG Petersohn A, et al. (1999): 2D-PAGE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GCGAACAGGGCTTTTTTAGAAGCCCTGTTTTTTTATTTTTCT >>>>>>>>> <<<<<<<<< |
katX |
|