Transcription factor: SigB

Factor type	ND
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	AGGTTT(-35)-N17-GGGTAT(-10)
Comment	RNA Polymerase Sigma-37 Factor (Sigma-B). General stress factor sigma.
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
aldY	aldY	`3986362..3986402`	None	ATTCGTTTACATATTGGCTTCAGCGGAAATAGAAGAAGACA	Petersohn A, et al. (1999): HB
bmrU-bmr-bmrR	bmrU	`2493595..2493638`	`-40:+4`	TCTTCGTTTACTGCTTACAGAAAAAGGGGATTATATAACCAGAA	Petersohn A, et al. (1999): PE RG
cdd-era	cdd	`2611373..2611426`	`-48:+6`	TTTTTAGAAATGGGCGTGAAAAAAAGCGCGCGATTATGTAAAATATAAAGTGAT	Wang LF, et al. (1984): S1 RO Song BH & Neuhard J (1989): HM
clpP	clpP	`3546087..3546150`	`-45:+19`	CATACGATGGTTTGAACCCCTGTATTTTTGGGGAAAATGGGAAAAAGAGACGACTTTGCATATC	Gerth U, et al. (1998): PE DB HM Voelker U, et al. (1994): 2D PAGE
csbA	csbA	`3615427..3615469`	`-40:+3`	ATGGTGATTGATTTTGGCTGAAAAGGGGTATGGTGTAAGTAGA	Boylan SA, et al. (1991): PE DB RG
csbB	csbB	`930710..930755`	`-43:+3`	AAAAAACAGGTTTAAACGACTTTAAAAAAAGGAATAGCCTTACTGA	Akbar S & Price CW (1996): RG Huang X & Helmann JD (1998): PE RG
csbC	csbC	`4087895..4087949`	None	TTTTCAAAACAAATGTTTCAAATGAGATAGGAAATGGGTACTAATCTATTAACTT	Akbar S, et al. (1999): RG; binding site mutation
ywmF-csbD	csbD	`3770314..3770367`	None	TAACATTAGAATGTTTATTGCCTCTCAGATCGGGAAGTTAACAAGTACACACAT	Akbar S, et al. (1999): RG; binding site mutation
csbX-bofC	csbX	`2838793..2838852`	`-50:+10`	TTTTAATCTAACAGGATTACAATTCAGCAAGCTTGGGTATATACTCCATTGATACTTTAA	Gomez M & Cutting SM (1997): PE
gcaD-prs-ctc	ctc	`58708..58749`	`-40:+2`	CGAGGTTTAAATCCTTATCGTTATGGGTATTGTTTGTAATAG	Ollington JF, et al. (1981): NB DP RO, in-vitro transcription Moran CP Jr, et al. (1981): FT S1 RO, dinucleotide priming Tatti KM & Moran CP Jr (1984): RO SDM Igo MM & Losick R (1986): RG NB DP Boylan SA, et al. (1993): RG Voelker U, et al. (1994): 2D PAGE, HB Petersohn A, et al. (1999): HB
ctsR-mcsAB-clpC-radA-yacK	ctsR	`101314..101365`	`-46:+6`	ATCAGCAATCAGGTTTTGTGGACCGGGAAAATGGAAATAATGAAGGATAGAG	Kruger E, et al. (1996): NB PE
dps	dps	`3136692..3136735`	`-41:+3`	AAGAGGTTTTAGCGTACGATATTAAGGGTATACATAGTCATATA	Antelmann H, et al. (1997): 2D-PAGE, NB PE DB
gsiB	gsiB	`494441..494482`	`-38:+4`	TGTTTGTTTAAAAGAATTGTGAGCGGGAATACAACAACCAAC	Maul B, et al. (1995): HB PE DB Mueller JP, et al. (1992): PE RG NB Voelker U, et al. (1994): 2D PAGE, HB
gspA	gspA	`3945444..3945482`	`-37:+2`	ACGTGTTTATTTTTTTGAAAAAGGGTATGTAACTTGTAC	Antelmann H, et al. (1995): PE HB DB NB Petersohn A, et al. (1999): HB
gtaB	gtaB	`3665544..3665586`	`-40:+3`	AAAATGTGTAAAAACATATTGAAAAGGGTAAATAGAGAATAGT	Varon D, et al. (1993): PE DB
katE-yxiS	katE	`4010232..4010275`	`-40:+4`	TAGCAGTTTATATGAAGAACGCCACGGGTAAATGTGCTGTAGAA	Engelmann S, et al. (1995): HB NB DB PE
katX	katX	`3964926..3964979`	`-47:+7`	AAAAAAACGGCTGTTTTAAAATCTTTCCATTCAGGGAATATTGTTACCGTTCAA	Petersohn A, et al. (1999): NB PE DB 2D-PAGE
nadE	nadE	`338213..338263`	`-42:+9`	ACAGTCATGATTCATTTTCATTGATTTAGGGAAATGATCAGTAATAAGGGA	Antelmann H, et al. (1997): NB PE
opuE	opuE	`728438..728482`	`-38:+7`	CAATGTTTCATCGCTTGAATGGCCGGGAATACTTTGTTAGGTTAA	Von Blohn C, et al. (1997): PE DB Spiegelhalter F & Bremer E (1998): NB RG DP SDM
phoPR	phoP	`2978538..2978583`	`-38:+8`	GTTAAGATGACATAAAATAGAGAAATAGGATGTCGGGGAATTATAA	Paul S, et al. (2004): PE, In-vitro reconstitution, DB (unclear result)
relA-yrvI	relA	`2822803..2822846`	`-40:+4`	TTTGCATTTATTTTATATAATATTTGGCTATTTGAACTTCTGCT	Wendrich TM, et al. (1997): PE
rsbRSTUVW-sigB-rsbX	rsbV	`522016..522058`	`-40:+3`	GAAAGGTTTAACGTCTGTCAGACGAGGGTATAAAGCAACTAGT	Kalman S, et al. (1990): PE S1 DB RG Boylan SA, et al. (1993): PE; Western blot; RG Voelker U, et al. (1994): 2D PAGE, HB
trxA	trxA	`2913580..2913621`	`-40:+2`	TCAGGTTTTAAAACAGCTCCGGCAGGGCATGGTAAAGTACAT	Scharf C, et al. (1998): PE, 2D-gel Petersohn A, et al. (1999): HB
yacLMN	yacL	`108559..108600`	`-39:+3`	TTTCGGTTAAAACCTTATGAATACGGGTATATTAATGTTGGT	Petersohn A, et al. (1999): HB PE
gabTD	gabD	`442756..442796`	`-37:+4`	AACGGATTACTTTTGCTGACAGCGGGAATTAACGGTAATAT	Petersohn A, et al. (1999): HB PE
ydaDEFG	ydaD	`471639..471683`	`-40:+5`	AGCCATGTTTATCCAAAGAGTGTGTGAGGTACACAACAAATAGAC	Petersohn A, et al. (1999): PE NB 2D-gel
ydaDEFG	ydaG	`473739..473778`	`-36:+4`	TTGTTTAAATCTTCCCCGGATGTGGAAAAGTAACAGCGGA	Petersohn A, et al. (1999): PE NB 2D-gel
ydaP	ydaP	`488772..488814`	`-39:+4`	TCCGGGTTTTAAAGCCTTTCTCCTGTGGTATTGAAAAAAGGAA	Petersohn A, et al. (1999): PE NB 2D-gel
ydaTS	ydaS	`492933..492974`	None	AAGTGTTTCGAAATGATCAGGAGCGGTTATTGATTGGTAAAT	Petersohn A, et al. (1999): HB
ydaTS	ydaT	`493461..493501`	None	ATGCGTTTTTATTTTTCACCTGCGGGTACCATTTTTATAAA	Petersohn A, et al. (1999): HB
dctB-ydbD	ydbD	`496582..496627`	`-41:+5`	GTTTTTCGTTTATCTTTCTATCGATCGGAAATATAAAAAGAGATAA	Price CW, et al. (2001): RACE-PCR DB
ydbP	ydbP	`508267..508311`	None	CTTTGATTACAGCCAGAGCTGTCTGCAGGGAAACATTATGTTCTG	Petersohn A, et al. (1999): HB
mhqNOP	ydfO	`596815..596864`	`-45:+5`	AAGACACCGTTTCGTTTTATGAAAACAGGGGAGAACAATTTAAGAGAGAT	Price CW, et al. (2001): RACE-PCR DB
ydhK	ydhK	`624374..624415`	None	TTATGTTTGGCTTTGCAAACAAAGGGGAATAGGACAAACTGC	Petersohn A, et al. (1999): HB
yfhKLM	yfhK	`928733..928775`	None	ACATGTTTCACCAGCCTGTCAATCAGGGAATACCACTTATATC	Antelmann H, et al. (2000): HB
yfkJIH	yfkJ	`861948..862000`	`-44:+9`	TTCATGAAGGTTTCTTTTTAGAGAAATAGGGGCAAAGAATAGGGAGGTTGCAC	Price CW, et al. (2001): RACE-PCR DB
yflA	yflA	`844711..844752`	`-37:+5`	AAAGGTTTATGTTTTTCCATCTATGGGAAATGATTCATAAAC	Petersohn A, et al. (1999): HB PE
yhdF	yhdF	`1022165..1022206`	`-38:+4`	TGGCGTTTATTCATTTCTGTCGTGTGGTAACGTTCAGTATCA	Petersohn A, et al. (1999): HB PE
yhdNO	yhdN	`1030207..1030246`	None	AAGGTTTAACATTTTTTCCAGAGGGGAAAAGATAGTGAAA	Petersohn A, et al. (1999): NB 2D-gel HB
nhaX	nhaX	ND	ND	ND	Pragai Z, et al. (2002): RG
yjbCD	yjbC	`1226864..1226911`	`-42:+6`	TAAGGCTGTTTAAACAAGAAGAAATGGGGTATATCTAAAAGTATGAAG	Petersohn A, et al. (1999): PE HB Antelmann H, et al. (2000): PE NB
yjgB	yjgB	`1285465..1285505`	None	ACATGTTTCGTTGCAAAAACACGGGGAAACGGAATGGTAGA	Petersohn A, et al. (1999): HB
ykgAB	ykgA	`1371901..1371943`	None	AATGGTTTAATGATTTTCATGATGAGGGAATAATAAATGTATT	Petersohn A, et al. (1999): HB
ohrB	ykzA	`1381943..1381998`	`-51:+5`	CTCGGCAAACATAGCATGTTTAAAAAGATCAGAAAGGGAAATATAACAACTAGATA	Volker U, et al. (1998): PE HM
yocK	yocK	`2097629..2097678`	None	CGATGTTTCCATGTTTGACAGAAGGCAAAACGGGAAACAGGATAGAAAGG	Petersohn A, et al. (1999): NB 2D-gel HB
yotK	yotK	`2153415..2153457`	None	TCTAGTTTCTCTTTTTAAAAGAGTAGGGTATTGCAAACAACAG	Petersohn A, et al. (1999): HB
yoxA-dacC	yoxA	`2000891..2000931`	None	AACGGTGTTTTTTTATTTGATAGGGGAAAATATAAAATGGA	Petersohn A, et al. (1999): HB
yoxCB-yoaA	yoxC	`2019368..2019408`	None	TTCTGATTAAAAAAACGGATACAGGGTAATGACATAAGAAA	Petersohn A, et al. (1999): HB
ypuBC	ypuB	`2434368..2434409`	None	TGCTGATTATACAAAAAGTGGATTGGGAATGATAAAAGAACA	Petersohn A, et al. (1999): HB
yqgZ	yqgZ	`2564427..2564482`	`-47:+9`	CTGTAAATGGTTTAAATGAAAAATGATCCGGGTAGTTATTCTACAAAGAGATGGTT	Price CW, et al. (2001): RACE-PCR DB
yqhA	yqhA	`2563939..2563983`	None	TTCGGTTTTTCACCTGTTCAGAAACTGGGCTAGCTGGATTCGAAC	Petersohn A, et al. (1999): HB
yqhQP	yqhQ	`2540891..2540932`	None	CTGCGAGTAAAATTTGAAAATAACGGGTATAATGCATGTAGA	Petersohn A, et al. (1999): HB
yqxD-dnaG-sigA	yqxD	`2604059..2604107`	`-41:+8`	ATCCTGGGTTTTTGGCTGTGCCAAAAGGGAATAATGAAAAACAATAGCA	Liao CT, et al. (1999): PE
yqxL	yqxL	`2561468..2561508`	None	ACTGGTTTAGTGACGCGGTTATTGGGCAATTAAAGAATAAA	Petersohn A, et al. (1999): HB
yrvD	yrvD	`2826191..2826232`	None	CCATGTTTAAAACCAGTCTTGATTGGGAAAGTTACCTCAATA	Petersohn A, et al. (1999): HB
ysnF	ysnF	ND	ND	ND	Pragai Z, et al. (2002): RG
ytkL	ytkL	`3010623..3010664`	None	ATAAGTTTTTCAGCTTTTTAAAAAGGGAAAATAAAAAAAACA	Petersohn A, et al. (1999): HB
ytxGHJ	ytxG	`3048037..3048082`	`-41:+5`	AGTACACATGTTTATGATTGAAGAAAACGGGTAAACAGCAGTATAT	Varon D, et al. (1996): PE DB RG, plasmid integration
yvgO	yvgO	ND	ND	ND	Pragai Z, et al. (2002): RG
yvrE	yvrE	`3406567..3406607`	None	AGTGGTTTGGACACCTCTTTGCCGGGAATAACAATATATAG	Petersohn A, et al. (1999): HB
yvyD	yvyD	`3631602..3631650`	`-42:+7`	GATTTATGTTTCAGCAGGAATTGTAAAGGGTAAAAGAGAAATAGATACA	Drzewiecki K, et al. (1998): PE NB DB Eymann C & Hecker M (2001): PE
ywjC	ywjC	`3818832..3818883`	`-44:+8`	AAAAATAGGTTTACGACTTGTCAGCTTTGGGAACTTAGGCTATATAAGACAA	Price CW, et al. (2001): RACE-PCR DB
ywmE	ywmE	`3774568..3774621`	`-48:+6`	TTTTTTATTGGTTTAAAAACAGTTTGGGCGGGAATGATACCCTAAAAAGGGGTT	Price CW, et al. (2001): RACE-PCR DB
ywtG	ywtG	`3693951..3694003`	`-49:+4`	TAAAAAGGTTTAATGGCCGGAAAAAGAGGCTAAAAGATTTCTAAAAAAATCCC	Price CW, et al. (2001): RACE-PCR DB
yxaAB	yxaB	`4112012..4112070`	`-48:+11`	GATGCACATGCCAATGCATAGCCATCCTTCTTTTTGGGTAGAGACAGTTAACACACAAT	Nagorska K, et al. (2008): 5' RACE, DB RG
yxkO	yxkO	`3973298..3973339`	None	TTTTGTTTGAAAAAGAAAAGGGACAGGAAAAATAGGAAAAGA	Petersohn A, et al. (1999): HB
yycD	yycD	`4158944..4158985`	None	GATCGTTTCGGACAGTAACAAGGCGGGAAAAATGCAATAAAA	Petersohn A, et al. (1999): HB