Regulated Operon: kinA

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
kinA scoB, + 1470026..1471846
COG0642T  

Operon evidence: linearized/supercoiled templates; downstream gene is transcribed in the opposite direction
Reference: Predich M, et al. (1992), Perego M, et al. (1989)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigH Promoter -42:+11 1469927..1469979 TAAGAATAGAAGGAGAATACTCATTTTCTAGCGAATCATACTAGGTAAAAGTC Predich M, et al. (1992): PE, in vitro addition of E-SigH
Antoniewski C, et al. (1990): RG
Spo0A Negative +13:+33 1469981..1470001 ATCTGTATATGTCGAAACACG Fujita M, et al. (1998): GS

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AATAAAAACAACGGCTTAAACGCCGTTGTTTATCGTCTGCATT
        >>>>>>>      <<<<<<<
1471850..1471869
4..23
-12.8
kinA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai