Transcription factor: Spo0A

Factor type	LuxR/UhpA
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	TGTCGAA
Comment	a key bi-functional regulator to control developmental transcription activities. Increases its affinity after phosphorylation (phosphorelay system). Spo0F is required for the phosphorylation. Two-domain structure. Binding consensus is called 0A box and can be located downstream of the initiation site. Often, two adjacent boxes are found. These listed sites might be viewed in its complementary strand.
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
metS	metS	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
rapA-phrA	rapA	SigA	Negative	ND	ND	ND	Mueller JP & Sonenshein AL (1992): DB RG Molle V, et al. (2003): GS CH
abrB	abrB	SigA	Negative	`45174..45201`	`+7:+34`	ATTTTGTCGAATAATGACGAAGAAAAAT	Perego M & Hoch J (1988): Genetics and Biotechnology of Bacilli, Vol. 2, pp. 129-134: RG DB Strauch M, et al. (1990): FT Fujita M, et al. (2005): RG GS Molle V, et al. (2003): GS CH
dltABCDE	dltA	SigX	Positive	`3952071..3952091`	`+1:+21`	ATGTGATTGTCGAAAAAACGG	Perego M, et al. (1995): DB FT
cdd-era	era	None	Positive	ND	ND	ND	Minkovsky N, et al. (2002): DB RG
kinA	kinA	SigH	Negative	`1469981..1470001`	`+13:+33`	ATCTGTATATGTCGAAACACG	Fujita M, et al. (1998): GS
kinC	kinC	SigA	Positive	`1518277..1518306`	`-30:-1`	ATTATTTGTCGAAGAATGGTACAATAAGTA	Kobayashi K, et al. (1995): GS FT
sinIR	sinI	SigA	Positive	`2552271..2552298`	`-50:-26`	ACCATTCGACATCATTCTCGTTTTTTTT	Shafikhani SH, et al. (2002): PE FT
spo0A	spo0A	SigH	Positive	`2518876..2518889`	`-18:-5`	TTTGTCGAATGTAA	Strauch MA, et al. (1992): FT
spo0A	spo0A	SigA	Negative	`2518953..2518987`	`+38:+72`	AATTTCATTTTTAGTCGAAAAACAGAGAAAAACAT	Strauch MA, et al. (1992): FT
spo0A	spo0A	SigA	Negative	`2519005..2519029`	`-5:+20`	AAAAGAAGATTTTTCGACAAATTCA	Strauch MA, et al. (1992): FT
spo0F	spo0F	SigH	Positive	`3810012..3810049`	`-84:-51`	CAAAAGAGAAAATGCTCAGAAAATGTCGTAAAGTAGAC	Strauch MA, et al. (1993): DP SDM FT
spo0F	spo0F	SigH	Positive	`3809913..3809955`	`+11:+53`	TTTGACGAAAATCATAATATTGGGGTGTAAAATGATGAATGAA	Strauch MA, et al. (1993): DP SDM FT
dacF-spoIIAAB-sigF	spoIIAA	SigH	Positive	`2445038..2445053`	`-28:-13`	TCATTCCGTCGAAATC	Baldus JM, et al. (1994): FT Fujita M, et al. (2005): OV RG GS
dacF-spoIIAAB-sigF	spoIIAA	SigH	Positive	`2445058..2445076`	`-51:-33`	TAGTTTTGTCACGGTGAAG	Baldus JM, et al. (1994): FT Fujita M, et al. (2005): OV RG GS
dacF-spoIIAAB-sigF	spoIIAA	SigH	Positive	`2445077..2445096`	`-71:-52`	TAATTATGCCGAATGACCAC	Baldus JM, et al. (1994): FT Fujita M, et al. (2005): OV RG GS
dacF-spoIIAAB-sigF	spoIIAA	SigH	Positive	`2445091..2445122`	`-66:-97`	CGATGGGAGACTGGACAAAATTTAAGTAATTA	Baldus JM, et al. (1994): FT Fujita M, et al. (2005): OV RG GS
spoIIE	spoIIE	SigA	Positive	`70375..70401`	`-134:-108`	TTTTCATTTTTAGACAACATTCCGGAA	York K, et al. (1992): SDM FT Fujita M, et al. (2005): GS
spoIIE	spoIIE	SigA	Positive	`70406..70422`	`-103:-87`	TTTTCATAAACGAATAT	York K, et al. (1992): SDM FT Fujita M, et al. (2005): GS
spoIIE	spoIIE	SigA	Positive	`70427..70443`	`-82:-66`	GCAGAAACCGTCGAAGA	York K, et al. (1992): SDM FT Fujita M, et al. (2005): GS
spoIIE	spoIIE	SigA	Positive	`70461..70481`	`-48:-28`	CCTTCTTTTGACAAAATCCTA	York K, et al. (1992): SDM FT Fujita M, et al. (2005): GS
spoIIGA-sigE-sigG	spoIIGA	SigA	Positive	`1603634..1603648`	`-100:-86`	ATACTTCCTCGACAA	Baldus JM, et al. (1994): SDM RO FT Fujita M, et al. (2005): RG OV GS
spoIIGA-sigE-sigG	spoIIGA	SigA	Positive	`1603649..1603664`	`-85:-70`	ATTAAGCAGATTTCCC	Baldus JM, et al. (1994): SDM RO FT Fujita M, et al. (2005): RG OV GS
spoIIGA-sigE-sigG	spoIIGA	SigA	Positive	`1603679..1603696`	`-55:-38`	TTCCTCTCAACATTAATT	Baldus JM, et al. (1994): SDM RO FT Fujita M, et al. (2005): RG OV GS
spoIIGA-sigE-sigG	spoIIGA	SigA	Positive	`1603693..1603710`	`-41:-24`	AATTGACAGACTTTCCCA	Baldus JM, et al. (1994): SDM RO FT Fujita M, et al. (2005): RG OV GS
skf	ybcO	SigA	Positive	`213824..213891`	`-64:+4`	AATTTTTAGGATAATATACAAAATCCCCCTTACTTCGACAATTGCAATCTGGTATTATCGTATCGCAT	Molle V, et al. (2003): GS CH Fujita M, et al. (2005): RG OV, gfp fusion, GS Chen G, et al. (2006): FT, binding site mutation
yqxM-sipW-tasA	yqxM	SigH	Positive	ND	ND	ND	Stover AG & Driks A (1999): Western blot Stover AG & Driks A (1999): RG
yuxH	yuxH	SigA	Negative	`3259283..3259348`	`-49:+17`	TTTTCATGTTTAGACAATTTTCGTCAAATTATTTGATATACTTAGGGGTGAAAGCCGCGCGTATTG	Fujita M, et al. (2005): RG Molle V, et al. (2003): CH GS
sdp	yvaW	None	Negative	ND	ND	ND	Fujita M, et al. (2005): OV RG GS Molle V, et al. (2003): CH GS
racA	ywkC	SigH	Positive	ND	ND	ND	Ben-Yehuda S, et al. (2003): DB RG Wu LJ & Errington J (2003): DB Western blot Molle V, et al. (2003): GS CH Fujita M, et al. (2005): RG OV
yxbCD	yxbC	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yppDE	yppD	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yppF	yppF	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yttP	yttP	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yocH	yocH	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yneEF	yneE	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yfmIJ	yfmI	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yusED	yusE	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
ycgMN	ycgM	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yqcGF	yqcG	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yqxIJ	yqxI	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
yerBC	yerB	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
accDA	accD	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
ykuJK-ykzF-ykuL-ccpC	ykzF	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
ykuJK-ykzF-ykuL-ccpC	ykuL	None	Positive	ND	ND	ND	Molle V, et al. (2003): GS CH
tkt	tkt	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
yqzDC	yqzD	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
med-comZ	med	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
yrrL	yrrL	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
ftsEX	ftsE	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
fla-che	flgB	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
lytE	lytE	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
ykaA-pit	ykaA	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
fruRKA	fruR	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
cotD	cotD	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
divIVA	divIVA	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
rocDEF	rocD	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
yvyE-yvhJ	yvyE	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
nfrA-ywcH	nfrA	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
nfrA-ywcH	ywcH	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
soj-spo0J	soj	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
rok	rok	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
dnaAN	dnaA	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
yqxD-dnaG-sigA	dnaG	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
yaaDE	yaaD	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
ylmDEFGH	ylmD	None	Negative	ND	ND	ND	Molle V, et al. (2003): GS CH
comK	comK	None	None	ND	ND	ND	Molle V, et al. (2003): GS CH
yvyD	yvyD	None	None	ND	ND	ND	Molle V, et al. (2003): GS CH
spoIID	spoIID	None	None	ND	ND	ND	Molle V, et al. (2003): GS CH
veg	veg	None	None	ND	ND	ND	Molle V, et al. (2003): GS CH
ygaO	ygaO	None	None	ND	ND	ND	Molle V, et al. (2003): GS CH
yjcPQ	yjcP	None	None	ND	ND	ND	Molle V, et al. (2003): GS CH
rocG	rocG	None	None	ND	ND	ND	Molle V, et al. (2003): GS CH
ywqCD	ywqC	None	None	ND	ND	ND	Molle V, et al. (2003): GS CH