Regulated Operon: ldh-lctP

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ldh lctE + 329774..330739
COG0039C ldh-BAC ldh-STA ldh-STR ldh-STA  
lctP ycgC + 330771..332396
COG1620C lctP-STA lldP-1-BAC  

Operon evidence: Northern blotting (2.7 kb transcript)
Reference: Cruz Ramos H, et al. (2000)
Comments: BSORF lists a 2.6 kb and a 1.5 kb transcript, both hybridizing to the lctP probe.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AlsR Positive ND ND ND Cruz Ramos H, et al. (2000): GS
ResD Positive ND ND ND Cruz Ramos H, et al. (2000): RG DB
SigA Promoter -39:+9 329676..329723 TCTCTTGCAAAAGTTTGTGAAGTGTTGCACAATATAAATGTGAAATAC Cruz Ramos H, e al. (2000): PE
YdiH Negative -39:+9 329676..329723 TCTCTTGCAAAAGTTTGTGAAGTGTTGCACAATATAAATGTGAAATAC Larsson JT, et al. (2005): RG DB
YdiH Negative -8:+46 329707..329760 ATATAAATGTGAAATACTTCACAAACAAAAAGACATCAAAGAGAAACATACCCT Larsson JT, et al. (2005): RG DB
ArfM Positive ND ND ND Marino M, et al. (2001): RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAAGCAGTACATGCCCAGCATGTACTGCTTTTTTTATGTTAAT
     >>>>>>>>>>>   <<<<<<<<<<<
332406..332430
10..34
-19.6
 lctP

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai