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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ohrB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ykzA | yzzE, ohrB, yzzE | + | 1381326..1381736 |
| Operon evidence: | Northern blotting (0.5 kb transcript) |
|---|---|
| Reference: | Volker U, et al. (1998) |
| Comments: | readthrough at this terminator leads to 0.8 kb and 1.4 kb transcripts |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | -51:+5 | 1381943..1381998 | CTCGGCAAACATAGCATGTTTAAAAAGATCAGAAAGGGAAATATAACAACTAGATA |
Volker U, et al. (1998): PE HM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ACCGGCATCCTGAGGATTCTCAGGATGTTTTTTGGTGTCGGA >>>>>>>>> <<<<<<<<< |
ykzA |
|