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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | opuE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| opuE | yerK | - | 726840..728318 | COG0591ER | x0883-BAC |
| Operon evidence: | Northern blotting (1.6 kb transcript) |
|---|---|
| Reference: | Spiegelhalter F & Bremer E (1998), Von Blohn C, et al. (1997), Whalen MB & Piggot PJ (1997) |
| Comments: | readthrough into downstream sapB, leading to a 2.4 kb transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -40:+3 | 728429..728471 | CGCTTGAATGGCCGGGAATACTTTGTTAGGTTAAGTTACCAAG |
Von Blohn C, et al. (1997): PE Spiegelhalter F & Bremer E (1998): NB RG DP SDM |
| SigB | Promoter | -38:+7 | 728438..728482 | CAATGTTTCATCGCTTGAATGGCCGGGAATACTTTGTTAGGTTAA |
Von Blohn C, et al. (1997): PE DB Spiegelhalter F & Bremer E (1998): NB RG DP SDM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AATAAGCCATCAAGCGCAGCTTGGTGGCTTTTGTGCTCTTGTT >>>>>>>>>> <<<<<<<<<< |
opuE |
|