 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | phoA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| phoA | phoAIV | - | 1017083..1018468 | COG1785P |
| Operon evidence: | Northern blotting (1.46 kb transcript) |
|---|---|
| Reference: | Allenby NE, et al. (2005) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| PhoP | Positive | -87:-20 | 1018505..1018573 | GCGTTTTTTCATTTCCTTACAAGGCTTTACTTATTGTTTACATGATCAACAGCCGCATTTAACAAAGTT |
Liu W, et al. (1998): DP GS RO FT Allenby NE, et al. (2005): DB AR NB |
| SigA | Promoter | -53:+17 | 1018471..1018540 | TTGTTTACATGATCAACAGCCGCATTTAACAAAGTTTCCCTAACATGATAAACGGAATACATTAAAGGAG |
Hulett FM, et al. (1994): PE |
| TenA | Positive | ND | ND | ND |
Pang AS, et al. (1991): DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TAAAAAGGATGCAGAACGCTGCATCCTCTTTTTTATAAATATC >>>>>>>>> <<<<<<<<< |
phoA |
|