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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | phoB-ydhF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| phoB | phoAIII | - | 620097..621485 | COG1785P | phoB-STA x1451-BAC | |
| ydhF | - | 619321..620031 |
| Operon evidence: | Northern blotting (2.2 kb transcript) |
|---|---|
| Reference: | Antelmann H, et al. (2000) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| PhoP | Positive (SigA promoter); Negative (SigE promoter) | -65:-7 (SigA); +18:+76 (SigE) | 621529..621587 | TCTTGTAAATCCAATCTTTAAAATCGATTAATACTAGCTTAACAGTTTAAAAATATAAT |
Liu W, et al. (1997): GS FT Abdel-Fattah WR, et al. (2005): RG; in-vitro transcription assay; FT Allenby NE, et al. (2005): DB AR |
| PhoP | Negative (SigE promoter) | -35:+14 | 621591..621639 | CTAAAACTTCTCATAAAAGAATAACCATTATTTAAGGGTGCCAGTTCAT |
Abdel-Fattah WR, et al. (2005): RG; in-vitro transcription assay; FT |
| SigA | Promoter | -45:+4 | 621519..621567 | AAATCGATTAATACTAGCTTAACAGTTTAAAAATATAATTGGGTTGTCA |
Chesnut RS, et al. (1991): PE DP Abdel-Fattah WR, et al. (2005): RG Allenby NE, et al. (2005): DB AR |
| SigE | Promoter | -35:+14 | 621591..621639 | CTAAAACTTCTCATAAAAGAATAACCATTATTTAAGGGTGCCAGTTCAT |
Chesnut RS, et al. (1991): PE DP Abdel-Fattah WR, et al. (2005): RG; in-vitro transcription assay |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATCAAGAACTCCCGTACAAGGTACGGGAGTTCTTTTTCTTATTTGTT >>>>>>>>>>>> <<<<<<<<<<<< |
ydhF |
|