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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | pst |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| pstS | yzmB | - | 2580715..2581617 | COG0226P | pstS-STR x0764-BAC | |
| pstC | yzmC | - | 2579717..2580646 | COG0573P | pstC-BAC x1206-BAC | |
| pstA | yzmD | - | 2578833..2579717 | COG0581P | pstBA-LAB | |
| pstBA | yzmE | - | 2578003..2578812 | COG1117P | pstBA-BAC | |
| pstBB | yzmF | - | 2577210..2577992 | COG1117P | pstBA-BAC |
| Operon evidence: | Northern blotting (4.4 kb transcript) |
|---|---|
| Reference: | Allenby NE, et al. (2004) |
| Comments: | mRNA produced by this operon is rapidly degraded, except for pstS |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| PhoP | Positive | -66:-15 | 2581674..2581724 | CACTGATTTACAAAACCTTAACATTCGGTTCAAACCCTTTTTACATAGAAC |
Liu W, et al. (1998): DP GS FT Qi Y, at al. (1997): PE RG Allenby NE, et al. (2005): DB AR |
| SigA | Promoter | -43:+7 | 2581652..2581701 | TTCGGTTCAAACCCTTTTTACATAGAACCTTTACTCTATACGTGTAGGAC |
Qi Y, at al. (1997): PE RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACAGGCTGAGTCAGCCTGTTTTTTTATCGTGTT >>>>>>> <<<<<<< |
pstBB |
|