Regulated Operon: rapE-phrE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
rapE yqcH + 2659213..2660340

 
phrE
+ 2660330..2660464

 

Operon evidence: Primer extension of phrE; genome analysis
Reference: Jiang M, et al. (2000), McQuade RS, et al. (2001)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComA Positive ND ND ND Jiang M, et al. (2000): RG
SigA Promoter -50:+10 2660205..2660265 TCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGGAAAAATAGAGGAT McQuade RS, et al. (2001): PE RG
SigH Promoter -50:+10 2660209..2660268 GAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGGAAAAATAGAGGATAGT McQuade RS, et al. (2001): PE RG DB
SigH Promoter -38:+4 2660258..2660299 TAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTC McQuade RS, et al. (2001): PE RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CTTTAGCCGTTTCATAACGGCTTTTTCTTATTTCTA
     >>>>>>    <<<<<<
2660498..2660513
34..49
-8.9
phrE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai