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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | rapE-phrE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| rapE | yqcH | + | 2659213..2660340 | |||
| phrE | + | 2660330..2660464 |
| Operon evidence: | Primer extension of phrE; genome analysis |
|---|---|
| Reference: | Jiang M, et al. (2000), McQuade RS, et al. (2001) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| ComA | Positive | ND | ND | ND |
Jiang M, et al. (2000): RG |
| SigA | Promoter | -50:+10 | 2660205..2660265 | TCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGGAAAAATAGAGGAT |
McQuade RS, et al. (2001): PE RG |
| SigH | Promoter | -50:+10 | 2660209..2660268 | GAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGGAAAAATAGAGGATAGT |
McQuade RS, et al. (2001): PE RG DB |
| SigH | Promoter | -38:+4 | 2660258..2660299 | TAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTC |
McQuade RS, et al. (2001): PE RG DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CTTTAGCCGTTTCATAACGGCTTTTTCTTATTTCTA >>>>>> <<<<<< |
phrE |
|