 |
Copyright: Human Genome Center, Inst. Med.
Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Factor type | LuxR/UhpA family |
|---|---|
| SWISS-PROT | ND |
| SubtiList | ND |
| Consensus seq. | TTGCGGNNNNCCGCAA----------TTGCNNNNATTT |
| Comment | positive regulator of genes involved in late-growth expression and in response to environmental stress; is phosphorylated by ComP; may cause DNA bending by bridging two binding sites |
| Link to | Phylogenetic profile, Weight matrix & Motif alignment |
| Operon | Regulated Gene | Sigma | Regulation | Absolute position | Location | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|---|---|
| degQ | degQ | SigA | Positive | 3257339..3257381 | -74:-32 | AGATTTGCGGTGTCACGCAGGACTTTTTTGCATACTTTTCGGT |
Msadek T, et al. (1991): DP DB RG |
| pel | pel | None | Positive | 827869..827884 | None | TTGCAGAATGCCGCAA |
Comella N & Grossman AD (2005): DB AR OV RG |
| rapA-phrA | rapA | SigA | Positive | 1315763..1315802 | -75:-36 | TTGCGGTTAGCCGAAATTCGACAATTGCGGTTATTTTGCG |
Mueller JP, et al. (1992): DP RO DB |
| rapC-phrC | rapC | SigA | Positive | 428727..428805 | -72:+7 | TTGCGTGCTCCCGAAAACAAAGATTGCGTGTTTTTCGGGTTGGGACGGCCTATAAACATGATAAAATATGACATAAACA |
Lazazzera BA, et al. (1999): DP HM PE Bongiorni C, et al. (2005): GS |
| rapE-phrE | rapE | None | Positive | ND | ND | ND |
Jiang M, et al. (2000): RG |
| rapF-phrF | rapF | None | Positive | ND | ND | ND |
Bongiorni C, et al. (2005): RG DB |
| srfAA-srfAB-comS-srfAC-srfAD | srfAA | SigA | Positive | 376560..376597 | -118:-81 | TTGCGGCATCCCGCAAAAAATATTGCTGTAAATAAACT |
Hahn J & Dubnau D (1991): DB RG Nakano MM, et al. (1991): DP SDM Roggiani M & Dubnau D (1993): GS FT |
| srfAA-srfAB-comS-srfAC-srfAD | srfAA | SigA | Positive | 376604..376641 | -74:-37 | TTTCGGCATCCCGCATGAAACTTTTCACCCATTTTTCG |
Hahn J & Dubnau D (1991): DB RG Nakano MM, et al. (1991): DP SDM Roggiani M & Dubnau D (1993): GS FT |
|