Regulated Operon: rapF-phrF

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
rapF ywhJ + 3846001..3847146

 
phrF ywhI + 3847130..3847249

 

Operon evidence: Primer extension of phrF; genome analysis
Reference: McQuade RS, et al. (2001), Genbank Z80360
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComA Positive ND ND ND Bongiorni C, et al. (2005): RG DB
SigH Promoter -36:+5 3847007..3847047 TTGAAGATTTCGCTATTGATGTGGCAAAATATTATCATGAA McQuade RS, et al. (2001): PE RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TTTAACCGCCGTCCATCGGCGGTTTTTTCGTCCCCTC
     >>>>>>     <<<<<<
3847250..3847266
1..17
-12.0
 phrF

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai