Regulated Operon: sigW-ybbM

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
sigW ybbL + 194849..195412
COG1595K x0624-BAC  
ybbM rsiW + 195415..196041

 

Operon evidence: Northern blotting (1.2 kb transcript measured by Cao et al.; 1.3 kb transcript measured by Horsburgh et al.)
Reference: Cao M, et al. (2002), Horsburgh MJ, et al. (2001)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Negative +14:+41 194835..194861 GAGGTTAGATAAATATGGAAATGATGA Qian Q, et al. (2002): RG FT
SigW Promoter -39:+4 194782..194824 AAAATTGAAACCTTTTGAAACGAAGCTCGTATACATACAGACC Huang X, et al. (1999): DB RG PE, in vitro transcription, RO
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GAGAAGAGTAAAGCGCGTTAGCCGCTTTGCTCTTTTTTTGCGGGCTG
     >>>>>>>>>>>    <<<<<<<<<<<<
196047..196073
6..32
-16.2
ybbM

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai