Transcription factor: SigW

Factor type	ND
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	TGAAACN(16)CGTA
Comment	ECF-type sigma factor
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
abh	abh	`1517766..1517807`	`-36:+6`	CGGGAAACTTTTTCAAAGTTTCATTCGTCTACGATATATTGA	Huang X & Helmann JD (1998): PE Huang X, et al. (1998): RO
yabMNOPQ-divIC-yabR	divIC	`69018..69059`	`-36:+6`	TTTGAAACTTCTTCCTGTGAAAATGCGTCTAACTTTTAGACG	Huang X, et al. (1998): RO Cao M, et al. (2002): AR
pbpE-racX	pbpE	`3535484..3535526`	`-40:+3`	ATATTTGAAACGTTAGTAGGTTAGTAACGTACAGAGATATGGG	Huang X, et al. (1999): S1 DB RG Popham DL, et al. (1993): PE Cao M, et al. (2002): AR
pbpX	pbpX	`1765780..1765818`	None	TTTTTGACAACTTTTTTAGGGCTTTATTCGTCTAACAAA	Cao M & Helmann JD (2004): RG
pspA-ydjGHI	pspA	`671169..671213`	`-40:+5`	AAAAGTGAAACTTTTAACGATAATAAATAGTATATGTAACAAGGG	Wiegert T, et al. (2001): AR PE DB RG Cao M, et al. (2002): ROMA AR RG PE RO Cao M, et al. (2002): AR
sigW-ybbM	sigW	`194782..194824`	`-39:+4`	AAAATTGAAACCTTTTGAAACGAAGCTCGTATACATACAGACC	Huang X, et al. (1999): DB RG PE, in vitro transcription, RO Cao M, et al. (2002): AR
sppA-yteJ	sppA	`3021072..3021112`	`-38:+3`	TGAAGTGAAACATTTTTCATATTGAATCGTATAATGAGAGA	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
xpaC-yaaN	xpaC	`35765..35807`	None	GAAGATGAAACTTGTTTAAGGATTGAACGTAGTAGATAATAAT	Huang X, et al. (1999): RO Cao M, et al. (2002): AR
ybfO	ybfO	`249911..249949`	None	GAAAAGGAAACTTTTTCTATATCTATCTCGTAATGACTA	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yceCDEFGH	yceC	`312040..312082`	`-40:+3`	TTTTACGAAACTTTGATATAATAACAAACGTATATATTAGTAA	Cao M, et al. (2002): ROMA AR RG RO PE Cao M, et al. (2002): AR
ydbST	ydbS	`512749..512791`	`-38:+5`	AAGAATGAAACCTTTCTGTAAAAGAGACGTATAAATAACGACG	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yeaA-ydjP-ydjO	yeaA	`683385..683427`	`-37:+6`	CTTTATGAAACCTTTGGCCCTATTTATCGTATTACGTAAAAAC	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yfhKLM	yfhL	`929352..929395`	`-38:+6`	ATGCATGAAACATTTCTTCTTTCTGCACGTAACAATGAGAAAGG	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yjbCD	yjbC	`1226822..1226865`	`-40:+4`	AAAAATGAAACCATGGCGGAAGTTCGCACGTCTTTATAGATGTA	Antelmann H, et al. (2000): PE NB Cao M, et al. (2002): HM RO RG DB Cao M, et al. (2002): AR
yjoB	yjoB	`1314385..1314427`	`-39:+4`	TGGGATGAAACAAAATGCTATGTCAATCGTATATATAACGTTC	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yknWXYZ	yknW	`1503518..1503560`	`-39:+4`	AAACATGAAACTTTTTGATATCCTTCCCGTACTATTTGTTAGA	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yndN	yndN	`1916595..1916639`	`-41:+4`	CTGTATGAAACTTTCTTATGAAAAAAGTCGTATATGTGGATGATC	Cao M, et al. (2001): PE RG DB OV Cao M, et al. (2002): AR
yoaF	yoaF	`2027445..2027483`	None	AATAATGAAACCCGGAGTATGCCAAGCCCGTATAACATA	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yoaG	yoaG	`2028669..2028707`	None	ATTTTTGAAACCTTTTATTAGCGCATTGCGTATAGCACG	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yobJ	yobJ	`2071111..2071153`	`-39:+4`	TTATATGAAACCTTTTTTATTTTAGCCCGTATTAAAAGTAAAT	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yozO	yozO	`2099959..2099997`	None	AATATTGAAACTTTTTTCTCTATATGTGCGTATTACTTG	Cao M, et al. (2002): HM AR DB Cao M, et al. (2002): AR
yqeZ-yqfA-yqfB	yqeZ	`2619819..2619857`	None	AAAAATGAAACCTTTGATACATTTGTTACGTATGAAGAG	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yqjL	yqjL	`2476904..2476941`	None	TTAGAGAAACGATCGGCTAAGGTTCTCCGTCTCCCTAG	Cao M, et al. (2002): RO Cao M, et al. (2002): AR
yrhH	yrhH	`2778501..2778545`	`-39:+6`	TCTATTGAAACATTTTTCAATACATTGCCGTCTAGTTGGTACCTT	Huang X & Helmann JD (1998): DB RG Huang X, et al. (1998): RO Cao M, et al. (2002): AR
ysdB	ysdB	`2951419..2951461`	`-39:+4`	AAAAGTGAAACCTTTTTCTATGCTTTTCGTATTACATCAGATC	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
ythPQ	ythP	`3072128..3072165`	None	GTTAAAGAAACTTTTTTTATTCTATTTCGTAGTAAATT	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yuaFGI	yuaF	`3182582..3182624`	`-39:+4`	AATTTTGAAACTTTTCCCGAGGTGTCTCGTATAAATGGTAACG	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yvlABCD	yvlA	`3608825..3608867`	`-38:+5`	GAATTTGAAACCTGAAGAGATTTTAAACGTATAAATAAGTAAA	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
ywaC	ywaC	`3950621..3950662`	`-39:+3`	ATTCATAGAACCTTGCAGCAGACAGGGACGTCTAGTACATGG	Cao M, et al. (2002): ROMA AR RG PE RO
ywbLMN	ywbN	`3928032..3928076`	`-39:+6`	AAATACAAAACAAATGATCAGTCCTATACGTCTTATGATAAATTA	Huang X, et al. (1998): RO Cao M, et al. (2002): ROMA AR RG PE
ywnJ	ywnJ	`3759619..3759671`	`-44:+9`	TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTACATGTAGG	Cao M, et al. (2002): AR Cao M & Helmann JD (2004): RO PE
ywrE	ywrE	`3718738..3718780`	`-39:+4`	TTTTATGAAACGTTTTTCCTTTTTCTTCGTATAAAGGTAGATT	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yxjJI	yxjI	`3997154..3997196`	`-40:+3`	GAGCCTGAAACCTTTTCGCCACCTATCCGTAATTTCATACAAG	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yxzE	yxzE	`3982908..3982950`	`-39:+4`	TGAAATGAAACCGGTCAGCGTTTCATCCGTATAACAGATATGG	Huang X, et al. (1999): S1