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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | sipS |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| sipS | - | 2432316..2432870 | COG0681U |
| Operon evidence: | Northern blotting (1.2 kb and 0.45 kb) |
|---|---|
| Reference: | Azevedo V, et al. (1993), Bolhuis A, et al. (1996), Genbank L09228 |
| Comments: | Azevedo found two transcripts, which correspond to the two promoter regions found by Bolhuis. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| DegU | Positive | -648:-628 | 2433527..2433547 | GATGTAATGAAAAGGAGATCG |
Bolhuis A, et al. (1996): DB OV RG NB Tjalsma H, et al. (1998): OV RG |
| SigA | Promoter | -40:+9 | 2433609..2433657 | ACCAAGCTGAGAAACGAACCCAATTAGTATGTAATCAAAATTAAGTAAA |
Bolhuis A, et al. (1996): PE NB RG |
| unknown | Promoter | -49:+7 | 2433580..2433635 | ATTAGTATGTAATCAAAATTAAGTAAACTTTAAAGTAGTACGGGTCATTGGGATTG |
Bolhuis A, et al. (1996): PE NB RG |
| unknown | Promoter | -51:+10 | 2432890..2432950 | CACTTCAATGGTCCTAATGGGATTTTTTTTCGATTCGTGATAACATAAATTGAAGACCGTT |
Bolhuis A, et al. (1996): PE NB RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATCAAGCAGCTTCCCATTGGGGCTGCTTTTTTTATATCTTT >>>>>>>> <<<<<<<< |
sipS |
|