Regulated Operon: sipS

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
sipS
- 2432316..2432870
COG0681U  

Operon evidence: Northern blotting (1.2 kb and 0.45 kb)
Reference: Azevedo V, et al. (1993), Bolhuis A, et al. (1996), Genbank L09228
Comments: Azevedo found two transcripts, which correspond to the two promoter regions found by Bolhuis.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
DegU Positive -648:-628 2433527..2433547 GATGTAATGAAAAGGAGATCG Bolhuis A, et al. (1996): DB OV RG NB
Tjalsma H, et al. (1998): OV RG
SigA Promoter -40:+9 2433609..2433657 ACCAAGCTGAGAAACGAACCCAATTAGTATGTAATCAAAATTAAGTAAA Bolhuis A, et al. (1996): PE NB RG
unknown Promoter -49:+7 2433580..2433635 ATTAGTATGTAATCAAAATTAAGTAAACTTTAAAGTAGTACGGGTCATTGGGATTG Bolhuis A, et al. (1996): PE NB RG
unknown Promoter -51:+10 2432890..2432950 CACTTCAATGGTCCTAATGGGATTTTTTTTCGATTCGTGATAACATAAATTGAAGACCGTT Bolhuis A, et al. (1996): PE NB RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ATCAAGCAGCTTCCCATTGGGGCTGCTTTTTTTATATCTTT
     >>>>>>>>     <<<<<<<<
2432289..2432309
7..27
-13.1
sipS

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai