Regulated Operon: sps

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
spsA ipa-63d - 3892351..3893121
COG0463M  
spsB ipa-64d - 3890922..3892346
COG1887M spsB-STA  
spsC ipa-65d - 3889732..3890901
COG0399M  
spsD ipa-66d - 3888862..3889731
COG0456R  
spsE ipa-67d - 3887741..3888862
COG2089M  
spsF ipa-68d - 3887026..3887748
COG1861M  
spsG spsH - 3886004..3887023
COG3980M  
spsI ipa-71d - 3885239..3885979
COG1209M  
spsJ ipa-72d - 3884292..3885239
COG1088M rfbB-BAC  
spsK ipa-73d - 3883427..3884278
COG1091M  
spsL ipa-73d - 3882979..3883434
COG1898M  

Operon evidence: Genome analysis
Reference: Glaser P, et al. (1993), Presecan E, et al. (1997)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigK Promoter -39:+5 3893155..3893198 CCTAGCGCAACTTGAGCATAAGCAACATAAGATAACGATAGTTT Eichenberger P, et al. (2004): Race-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AACGTGATCAATCGAAGAGCAGAGGCATCTTCGACTTTTTTTGCCCTTTT
           >>>>>>>>>    <<<<<<<<<<
3882938..3882960
19..41
-14.0
spsL

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai