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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | sspOP |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| sspO | cotK | - | 1926306..1926452 | sspO-BAC sspO-BAC | ||
| sspP | cotL | - | 1926128..1926274 |
| Operon evidence: | lacZ-sspP transcriptional fusion |
|---|---|
| Reference: | Cabrera-Hernandez & Setlow P (2000) |
| Comments: | no transcriptional fusion experiment was performed for the downstream cotM gene |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigG | Promoter | -41:+8 | 1926457..1926505 | GCTCTCTCATATAACACAATAAAAGAAGCCATATTATGATTGAGGTGAT |
Cabrera-Hernandez A & Setlow P (2000): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAGCAGACCTTAGTGTCTGTTTTTTTATGCGTTC >>>>> <<<<< |
sspP |
|