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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | vpr |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| vpr | ipa-45r | + | 3907844..3910264 | COG1404O |
| Operon evidence: | Northern blotting (2.5 kb transcript) |
|---|---|
| Reference: | Sloma A, et al (1991), Presecan E, et al. (1997), Allenby NE, et al. (2005) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| LexA | Negative | ND | 3907649..3907672 | GTATACGAACGTATATTCCTAACT |
Au N, et al. (2005): GS |
| PhoP | Positive | ND | ND | ND |
Allenby NE, et al. (2005): DB AR NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCCCTGCCGATTCGGCAGGGCTTTTTAAAGATCAGT >>>>>>>>> <<<<<<<<< |
vpr |
|