Regulated Operon: wapA-yxxG

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
wapA
- 4023544..4030548
COG3209M  
yxxG
- 4023054..4023482

 

Operon evidence: Northern blotting (8.0 kb transcript)
Reference: Yoshida K, et al. (2000), Serizawa M, et al. (2005)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
DegU Negative -42:-19 4030602..4030625 AAAAATATTGTAATGATATTTCAG Dartois V, et al. (1998): DB RG DP PE SDM
DegU Negative +5:+21 4030563..4030579 ATATTACTTTTATTACA Dartois V, et al. (1998): DB RG DP PE SDM
SigA Promoter -40:+4 4030580..4030623 AAATATTGTAATGATATTTCAGTCTAGTTAAGATTATTGAGTAA Dartois V, et al. (1998): PE RG
YvrH Positive ND ND ND Serizawa M, et al. (2005): NB DB AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
ATAAAGCTTGTATCGATAAGCGATACAAGCTTTTTTAGAACAAAT
     >>>>>>>>>>     <<<<<<<<<<
4022829..4022853
201..225
-17.0
 yxxG

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai