Regulated Operon: xsa

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
xsa
- 2913661..2915148
COG3534G  

Operon evidence: Northern blotting (1.6 kb transcript)
Reference: Scharf C, et al. (1998), Raposo MP, et al. (2004)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AraR Negative -77:-46 2915293..2915324 TATAAATACATACGTACAAATATAAAAACAAT Raposo MP, et al. (2004): RG PE FT
AraR Negative -38:-7 2915254..2915285 GTCGTTGACATGTACGAACATATATAATATGG Raposo MP, et al. (2004): RG PE FT
SigA Promoter -38:+9 2915239..2915285 GTCGTTGACATGTACGAACATATATAATATGGTTACTTTAAAAGCGC Raposo MP, et al. (2004): RG PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
CGCAAGAGCGCCGGAGCTTCATGCCGGCGCTCTTTTTCAGGTTTTAA
     >>>>>>>>>         <<<<<<<<<
2913626..2913652
9..35
-20.7
 xsa

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai