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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | xynPB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| xynP | xynC, ynaJ | + | 1887352..1888743 | COG2211G | ||
| xynB | ynaK | + | 1888774..1890375 | COG3507G |
| Operon evidence: | Genome analysis; downstream gene is on the opposite strand |
|---|---|
| Reference: | Hastrup S: Genetics and Biotechnology of Bacilli Vol. 2: pp. 79-83 (1988) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CcpA | Negative | +219:+242 | 1887249..1887272 | TGTTTTGAAAGCGCTTTTATAAAA |
Lindner C, et al. (1994): DB HB HM RG Galinier A, et al. (1999): DP RG FT |
| SigA | Promoter | -47:+11 | 1886984..1887041 | CTGAAAAAGATGTTGAAAAAGTCGAAAGGATTTTATAATATTAAGTCAAGTTAGTTTG |
Hastrup S (1988): Genetics and biotechnology of Bacilli, vol.2 p.79-83: S1 Galinier A, et al. (1999): PE DP |
| XylR | Negative | -3:+35 | 1887028..1887065 | GTCAAGTTAGTTTGTTTGATCAACAAACTAATGAAATG |
Hastrup S (1988): Genetics and biotechnology of Bacilli, vol.2 p.79-83: ND Kreuzer P, et al. (1989): HM Galinier A, et al. (1999): RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTGCACATGAAAAAGGAGATTTCTATTTTAGAACTCCTTTTTCATATGAGAA >>>>>>>>>>> <<<<<<<<< |
xynB |
|