Regulated Operon: xynPB

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
xynP xynC, ynaJ + 1887352..1888743
COG2211G  
xynB ynaK + 1888774..1890375
COG3507G  

Operon evidence: Genome analysis; downstream gene is on the opposite strand
Reference: Hastrup S: Genetics and Biotechnology of Bacilli Vol. 2: pp. 79-83 (1988)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CcpA Negative +219:+242 1887249..1887272 TGTTTTGAAAGCGCTTTTATAAAA Lindner C, et al. (1994): DB HB HM RG
Galinier A, et al. (1999): DP RG FT
SigA Promoter -47:+11 1886984..1887041 CTGAAAAAGATGTTGAAAAAGTCGAAAGGATTTTATAATATTAAGTCAAGTTAGTTTG Hastrup S (1988): Genetics and biotechnology of Bacilli, vol.2 p.79-83: S1
Galinier A, et al. (1999): PE DP
XylR Negative -3:+35 1887028..1887065 GTCAAGTTAGTTTGTTTGATCAACAAACTAATGAAATG Hastrup S (1988): Genetics and biotechnology of Bacilli, vol.2 p.79-83: ND
Kreuzer P, et al. (1989): HM
Galinier A, et al. (1999): RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TTGCACATGAAAAAGGAGATTTCTATTTTAGAACTCCTTTTTCATATGAGAA
              >>>>>>>>>>>   <<<<<<<<<
1890391..1890413
16..38
-10.3
xynB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai