Regulated Operon: | xynPB |
Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
---|---|---|---|---|---|---|
xynP | xynC, ynaJ | + | 1887352..1888743 | COG2211G | ||
xynB | ynaK | + | 1888774..1890375 | COG3507G |
Operon evidence: | Genome analysis; downstream gene is on the opposite strand |
---|---|
Reference: | Hastrup S: Genetics and Biotechnology of Bacilli Vol. 2: pp. 79-83 (1988) |
Comments: |
Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
---|---|---|---|---|---|
CcpA | Negative | +219:+242 | 1887249..1887272 | TGTTTTGAAAGCGCTTTTATAAAA |
Lindner C, et al. (1994): DB HB HM RG Galinier A, et al. (1999): DP RG FT |
SigA | Promoter | -47:+11 | 1886984..1887041 | CTGAAAAAGATGTTGAAAAAGTCGAAAGGATTTTATAATATTAAGTCAAGTTAGTTTG |
Hastrup S (1988): Genetics and biotechnology of Bacilli, vol.2 p.79-83: S1 Galinier A, et al. (1999): PE DP |
XylR | Negative | -3:+35 | 1887028..1887065 | GTCAAGTTAGTTTGTTTGATCAACAAACTAATGAAATG |
Hastrup S (1988): Genetics and biotechnology of Bacilli, vol.2 p.79-83: ND Kreuzer P, et al. (1989): HM Galinier A, et al. (1999): RG |
Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
---|---|---|---|---|
TTGCACATGAAAAAGGAGATTTCTATTTTAGAACTCCTTTTTCATATGAGAA >>>>>>>>>>> <<<<<<<<< |
xynB |
|