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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ybaK-cwlD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ybaK | ybxH | + | 156109..156552 | |||
| cwlD | + | 156612..157325 | COG0860M | cwlD-BAC |
| Operon evidence: | Northern blotting (1.2 kb transcript) |
|---|---|
| Reference: | Sekiguchi J, et al. (1995) |
| Comments: | Internal promoter in front of cwlD, leading to a 0.73 kb transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| LexA | Negative | -124:-101 | 155965..155988 | ATTACAGAACATTTGTTCCTCACC |
Au N, et al. (2005): GS AR DB |
| SigG | Promoter | -42:+5 | 156047..156093 | AATTCGGGCATTGTTTCATCATCCAAACCTCAAAATAATCGGTAAAA |
Sekiguchi J, et al. (1995): PE NB DB |
| SigE | Promoter | -39:+10 | 156549..156597 | GTAATCATATTTCCCGACCCTGTCCCATAGTTATGTAATAACGGACAAG |
Sekiguchi J, et al. (1995): PE NB DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GGAGACCCTCCGGAGTAATGGAGGGTTTTCTTGTGGTTCT >>>>>>> <<<<<<< |
cwlD |
|