 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ycdA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ycdA | - | 299438..300502 |
| Operon evidence: | Northern blotting (0.9 kb transcript); upstream and downstream genes are on the opposite strand |
|---|---|
| Reference: | BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| DegU | Positive | -130:-40 | 300723..300813 | CCAACTAATCAAAAAGTAATAGTCTAAAATACACAGTTTTCTGAGTTTACCAGTTTTACCAGAACATTTTTCACCAAAAATAGGATGATGA |
Kobayashi K, et al. (2010): AR HB DB GS Ogura M, et al. (2012): GS FT DP |
| SigA | Promoter | -50:+10 | 300674..300733 | TAGGATGATGAACCTATTCAATATAAAAGCTAATAATCTTAAAATTAATTCCGTTGTAAC |
Irnov I, et al. (2010): ND Ogura M, et al. (2012): ND |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GGAAATAGCCATGACGGCTATTTCCTTTTTTATTT >>>>> <<<<< |
ycdA |
|