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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yceCDEFGH |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yceC | + | 312159..312758 | COG2310T | |||
| yceD | + | 312780..313361 | COG2310T | yceD-BAC-2 | ||
| yceE | + | 313396..313974 | COG2310T | yceD-BAC-1 yceD-BAC-2 | ||
| yceF | + | 314025..314798 | COG0861P | yceF-BAC | ||
| yceG | + | 314883..316496 | ||||
| yceH | + | 316512..317603 | COG3853P |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Cao M, et al. (2002) |
| Comments: | Northern blotting results in BSORF show various transcripts in this region. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -45:+2 | 312022..312068 | TCGTCAATTATTCTTAACTTTTACGAAACTTTGATATAATAACAAAC |
Cao M, et al. (2002): PE |
| SigW | Promoter | -40:+3 | 312040..312082 | TTTTACGAAACTTTGATATAATAACAAACGTATATATTAGTAA |
Cao M, et al. (2002): ROMA AR RG RO PE Cao M, et al. (2002): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TAAAAACCCCGCTTGTGGAACATAAGCGGGGTATTTCAATTACATCAT >>>>>>>>>>>> <<<<<<<<<<<< |
yceH |
|