 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yciABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yciA | + | 364259..365173 | COG1469S | |||
| yciB | + | 365170..365754 | COG1376S | |||
| yciC | + | 366063..367256 | COG0523R | x0659-BAC |
| Operon evidence: | downstream genes are on the opposite strand |
|---|---|
| Reference: | Gaballa A & Helmann JD (1998) |
| Comments: | Internal promoter in front of yciC. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -40:+25 | 364181..364245 | TTTCTCTTGATTTTCAACAGTGAACCGATCAAAATAAATAGTAATTATTACGATTTGTTAGTGAG |
Gaballa A, et al. (2002): PE |
| Zur | Negative | -10:+18 | 364211..364238 | AAAATAAATAGTAATTATTACGATTTGT |
Gaballa A, et al. (2002): GS FT |
| SigA | Promoter | -50:+20 | 365752..365827 | TGAATTGAAAACCGTTGACAAAAAGGAAAAAAGACCATACAATTTAAATCGTAACAATTACGTTTTATGATAAATG |
Gaballa A, et al. (2002): PE Gabriel, S.E., et al. (2008): PE |
| Zur | Negative | -10:+18 | 365792..365819 | AATTTAAATCGTAACAATTACGTTTTAT |
Gaballa A, et al. (2002): GS Gabriel, S.E., et al. (2008): SDM |
| Zur | Negative | +221:+248 | 366022..366049 | AATTTAAATCGTAATCATTCTATTTTAA |
Gaballa A & Helmann JD (1998): DB RG GS HM FT Gaballa A, et al. (2002): GS Gabriel, S.E., et al. (2008): SDM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCCGTCCCATGGGGAACGGCTTTTTTTAATGAAAC >>>>>>>> <<<<<<<<< |
yciC |
|