Regulated Operon: yciABC

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yciA
+ 364259..365173
COG1469S  
yciB
+ 365170..365754
COG1376S  
yciC
+ 366063..367256
COG0523R x0659-BAC  

Operon evidence: downstream genes are on the opposite strand
Reference: Gaballa A & Helmann JD (1998)
Comments: Internal promoter in front of yciC.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -40:+25 364181..364245 TTTCTCTTGATTTTCAACAGTGAACCGATCAAAATAAATAGTAATTATTACGATTTGTTAGTGAG Gaballa A, et al. (2002): PE
Zur Negative -10:+18 364211..364238 AAAATAAATAGTAATTATTACGATTTGT Gaballa A, et al. (2002): GS FT
SigA Promoter -50:+20 365752..365827 TGAATTGAAAACCGTTGACAAAAAGGAAAAAAGACCATACAATTTAAATCGTAACAATTACGTTTTATGATAAATG Gaballa A, et al. (2002): PE
Gabriel, S.E., et al. (2008): PE
Zur Negative -10:+18 365792..365819 AATTTAAATCGTAACAATTACGTTTTAT Gaballa A, et al. (2002): GS
Gabriel, S.E., et al. (2008): SDM
Zur Negative +221:+248 366022..366049 AATTTAAATCGTAATCATTCTATTTTAA Gaballa A & Helmann JD (1998): DB RG GS HM FT
Gaballa A, et al. (2002): GS
Gabriel, S.E., et al. (2008): SDM

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCCGTCCCATGGGGAACGGCTTTTTTTAATGAAAC
     >>>>>>>>   <<<<<<<<<
367264..367283
8..27
-13.5
yciC

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai