Regulated Operon: yfnHGFED

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yfnH
+ 798469..799233
COG1208MJ  
yfnG
+ 799303..800208
COG0451MG  
yfnF
+ 800232..801143

 
yfnE
+ 801172..802350
COG1216R  
yfnD
+ 802351..803286

 

Operon evidence: Northern blotting
Reference: BSORF, Genbank D86418
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigK Promoter -39:+6 798321..798365 TTGGTCACCAAGGCTGGCTTTCTCTCATATCATTACAGTAGATTT Eichenberger P, et al. (2004): Race-PCR
SigE Promoter -37:+6 801172..801214 GTGAAAGCAAGCGTTATTATTCCTGCATATAATTCGAAGGAGC Eichenberger P, et al. (2004): Race-PCR
SigK Promoter -37:+6 801172..801214 GTGAAAGCAAGCGTTATTATTCCTGCATATAATTCGAAGGAGC Eichenberger P, et al. (2004): Race-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAACCCCCTGCCGCCTGGCAGGGGTTTTTTCAGCTATGC
     >>>>>>>>    <<<<<<<<
803292..803311
6..25
-18.6
 yfnD

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai