 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yhcYZ-yhdA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yhcY | + | 1008668..1009807 | COG4585T | x0361-BAC | ||
| yhcZ | + | 1009804..1010448 | COG2197TK | yhcZ-BAC | ||
| yhdA | + | 1010445..1010969 | COG0431R |
| Operon evidence: | search in progress |
|---|---|
| Reference: | Jordan S, et al. (2006) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+10 | 1008592..1008651 | CATCCTACAAGTGAAGCAATGAAATACAAAAAACTGGTATAATCTTAAATACAAGATCAA |
Jordan S, et al. (2006): PE |
| YvqC | Positive | -80:-51 | 1008562..1008591 | TTTTTCTCATCCAAAAGTCTGAAAGAAAAT |
Jordan S, et al. (2006): DP, PE, RG, SDM Kobayashi K, et al. (2001): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAGCAGGAAATCCCGGCGTCTAAACGCCGGGATTTGTTTATGTGAGA >>>>>>>>> <<<<<<<<< |
yhdA |
|