Regulated Operon: yhdNO

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yhdN
+ 1030265..1031260
COG0667C  
yhdO
+ 1030703..1031302

 

Operon evidence: Northern blotting (1.8 kb transcript)
Reference: Petersohn A, et al. (1999), Genbank Y14082
Comments: The readthrough terminator downstream of yhdN leads to a 1.2 kb transcript.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter ND 1030207..1030246 AAGGTTTAACATTTTTTCCAGAGGGGAAAAGATAGTGAAA Petersohn A, et al. (1999): NB 2D-gel HB
YlpC Negative ND 1031282..1031343 CAGCTTTTTGGCGTTTAAACGAGAGAAATCTTAAAAATTAGTACCAGGTAATAAAAAATATT Schujman GE, et al. (2003): DB AR RG GS, immunoblotting

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GAAAAGCACCCTATACAAGGTGCTTTTCTTATTATGCT
     >>>>>        <<<<<
1032037..1032054
735..752
-8.1
 yhdO
CAAAAGCTGAGGGCGAATCCTCAGCTTTTTGGCGTTTAAA
     >>>>>>>>    <<<<<<<<
1031266..1031285
-36..-17
-13.7
 yhdO

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai