Regulated Operon: ykcBC

Genes
Genes Synonyms Direction Genome position Function COG ID
ykcB
+ 1354285..1356435
COG1807M
ykcC
+ 1356447..1357418
COG0463M

Operon evidence: Co-regulated by YclJ, Genome analysis
Reference: Ogura M, et al. (2008)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YrkP Positive -100:-1 1354185..1354284 GGAATGGCCTCGGCAAAAATATTGTCTTTGTTTATTAATAGTTTATTCATATTTGCTTGTTACACTATTTCAAAGTTAGACAAAAAGGAGTGAAAAATAA Ogura M, et al. (2008): GS FT
YclJ Positive -61:-23 1354205..1354244 ATTGTCTTTGTTTATTAATAGTTTATTCATATTTGCTTGT Ogura M, et al. (2010): OV GS FT
SigA Promoter -50:+10 1354217..1354276 TATTAATAGTTTATTCATATTTGCTTGTTACACTATTTCAAAGTTAGACAAAAAGGAGTG Ogura M, et al. (2010): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
CATATGTCATAACCTCAAACCCCCTGTCCGTAATGGACAGGGGGTTTTTATGCTCTGAG
                   >>>>>>>>>>     <<<<<<<<<<
1357426..1357450
8..32
-24.0
 ykcC

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai