Regulated Operon: ykuJK-ykzF-ykuL-ccpC

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ykuJ
+ 1484117..1484356
COG4703S  
ykuK
+ 1484466..1484984
COG1978S  
ykzF
+ 1485118..1485315

 
ykuL
+ 1485453..1485896
COG4109K  
ccpC ykuM + 1486045..1486926
COG0583K  

Operon evidence: Northern blotting (2.8 kb transcript)
Reference: Blencke HM, et al. (2006), Kim HJ, et al. (2002)
Comments: An 1.8 kb ykzF-ykuL-ccpC transcript and a 0.9 kb monocistronic ccpC transcript were also detected.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
Spo0A Positive ND ND ND Molle V, et al. (2003): GS CH
Spo0A Positive ND ND ND Molle V, et al. (2003): GS CH
CcpA Negative -81:-60 1485932..1485953 GAAAAAAGAAAGCGCATACATA Kim HJ, et al. (2002): GS FT
CcpC Negative -10:+15 1486003..1486027 GGGAGATAAGAAAAACTTATTGATA Kim HJ, et al. (2002): GS FT
SigA Promoter -44:+10 1485969..1486022 GGGCTTGAATAAGAAACTAAGATTTTATTAGAATGGGAGATAAGAAAAACTTAT Kim HJ, et al. (2002): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TTAAAGACAGCGAGGTGCTGTCTTTTTTTTATTTATC
     >>>>>>     <<<<<<
1486928..1486944
2..18
-11.2
 ccpC

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai