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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yoxA-dacC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yoxA | - | 1999849..2000826 | COG2017G | |||
| dacC | pbp | - | 1998340..1999815 | COG2027M |
| Operon evidence: | lacZ plasmids |
|---|---|
| Reference: | Pedersen LB, et al. (1998) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | ND | 2000891..2000931 | AACGGTGTTTTTTTATTTGATAGGGGAAAATATAAAATGGA |
Petersohn A, et al. (1999): HB |
| SigH | Promoter | ND | 2000874..2000918 | TATTTGATAGGGGAAAATATAAAATGGAGGAAATATGGTACAGTA |
Pedersen LB, et al. (1998): RG SDS-PAGE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GGAGACCTGTTTTCCAAGAGAAAACAGGTTTTTTTATGTCTGT >>>>>>>>> <<<<<<<<< |
dacC |
|